Photobacterium profundum: PBPRA2449
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Entry
PBPRA2449 CDS
T00173
Symbol
IHFB
Name
(GenBank) putative integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
ppr
Photobacterium profundum
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppr03032
]
PBPRA2449 (IHFB)
03036 Chromosome and associated proteins [BR:
ppr03036
]
PBPRA2449 (IHFB)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA2449 (IHFB)
DNA replication proteins [BR:
ppr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PBPRA2449 (IHFB)
Chromosome and associated proteins [BR:
ppr03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
PBPRA2449 (IHFB)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
PBPRA2449 (IHFB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HAAS
Coagulin
Motif
Other DBs
NCBI-ProteinID:
CAG20832
UniProt:
Q6LPE4
LinkDB
All DBs
Position
1:complement(2833699..2833989)
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AA seq
96 aa
AA seq
DB search
MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMAGTLAEGDRIEIRGFGSFSLHYRAPRV
GRNPKTGDKVELDGKYVPHFKPGKELRDRVNAAIAA
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtctgaattaattgaaaggctatgtagtcaacaaacacatctttctgccaaa
caggtagaagatgcaatcaaggaaatccttgagcacatggcgggtacccttgcagaaggc
gaccgtattgagatccgtggctttggtagcttctctttacattaccgtgctccgcgcgta
ggtcgtaatcctaagactggtgataaagttgagttggatggtaaatacgttcctcacttc
aagccaggcaaagaattacgtgaccgtgttaatgctgcaattgctgcttaa
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