Photobacterium profundum: PBPRA2634
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Entry
PBPRA2634 CDS
T00173
Symbol
YPO3154
Name
(GenBank) putative bacterial nucleoid DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ppr
Photobacterium profundum
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppr03032
]
PBPRA2634 (YPO3154)
03036 Chromosome and associated proteins [BR:
ppr03036
]
PBPRA2634 (YPO3154)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA2634 (YPO3154)
DNA replication proteins [BR:
ppr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PBPRA2634 (YPO3154)
Chromosome and associated proteins [BR:
ppr03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PBPRA2634 (YPO3154)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PBPRA2634 (YPO3154)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
ACP_syn_III_C
Barstar
GTP_EFTU_D2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
CAG21013
UniProt:
Q6LNW3
LinkDB
All DBs
Position
1:complement(3050386..3050697)
Genome browser
AA seq
103 aa
AA seq
DB search
MLTDNVHRGDEIVNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFG
TFSVRDRAARTGRNPQTGEEIQIAAAKVPGFKPGKALKDSVNL
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
ttgcttacggacaatgttcatagaggggatgaaatcgtgaacaaaactcagttagttgat
aaaatcgcagaaagtgcagatatctcaaaagcgtctgctggtcgtgctctagatgcattc
attgatgctgtatctggtacattgaaagatggtgatcaggttgctctagtcggttttggt
accttctcagtgcgtgaccgtgcagcacgtacaggtcgtaaccctcaaacgggtgaagaa
attcaaattgcagcagcgaaagtaccaggcttcaagccaggtaaagcacttaaagattct
gtaaatttataa
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