Photobacterium profundum: PBPRA2953
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Entry
PBPRA2953 CDS
T00173
Symbol
DNAE
Name
(GenBank) putative DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03030
DNA replication
ppr03430
Mismatch repair
ppr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PBPRA2953 (DNAE)
03430 Mismatch repair
PBPRA2953 (DNAE)
03440 Homologous recombination
PBPRA2953 (DNAE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppr03032
]
PBPRA2953 (DNAE)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA2953 (DNAE)
Enzymes [BR:
ppr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PBPRA2953 (DNAE)
DNA replication proteins [BR:
ppr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PBPRA2953 (DNAE)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PBPRA2953 (DNAE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CAG21287
UniProt:
Q6LN39
LinkDB
All DBs
Position
1:complement(3383753..3387229)
Genome browser
AA seq
1158 aa
AA seq
DB search
MADPRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGA
GMKPIIGADFKVHSEELENELADLTILATDNDGYQNLTMLISKAYLRGHVQHQPVIDKEW
LVQYGKGLILLSGRCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVRTGRPDEDAY
IHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPKLYSPQQYLR
TEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDLSTEDFLVVKSREGLE
RRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGPG
RGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAEI
YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEPGMTLAKAFEAEPQL
GDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFSPLYCDAEGANPVTQF
DKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINIASIPMDDKKSFAMLQ
RSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEV
SYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA
KQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLYLKAHYPAE
FMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVDEQGAIVYGIGAVKGV
GEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLGPNRATLMAT
LNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIPEWPDKIWLEGERETLGLYL
TGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMTTKRGTRIGLMTLDDR
SGRMEVMLFSDALERYLDLLEKDKIVVVSGQVSFDDFNGGLKMSAREVLDISEAREKHLR
GLAISVTEQQVDEQFFARFSQVLEPHRAGTVPVNVYYQRSNARAKLTLGTEWRITPSDQL
ILDLKLLLGEKQVELEFN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctcgctttattcatcttcatattcatagtgacttttcaatggttgatggc
ttatcaaaagtctcaccgttagttaaaaaagtggctgaaattggtatgcccgcaatggca
ttaaccgactttactaacctgtgtggtttggtgaaattctactttgcagcacatggtgct
ggaatgaagccgatcatcggcgctgattttaaagtgcattcagaagagcttgaaaatgag
ctcgctgatctcaccattttggcgactgacaacgacggttatcaaaatttaaccatgttg
atttcgaaagcgtatttgcgtggtcatgttcagcatcaacccgttatcgataaagagtgg
ttagttcaatatggcaaagggctaattttactgtcgggtcgatgtggcgatgtcggtaaa
gccttactaaaaggtaaccaattgctggtcaatcgctgtcttgagttctataaaacccat
tttgaagatagcttttatttggagttagtccgaactgggcgtcctgatgaagatgcatac
attcactttgcggttgaacttgctgcgaatgaagatctgcccgttgtcgcaaccaacgat
gtgcggtttttatctgcggaacaatttgatgcgcacgaaatccgagtgtcaattcatgat
ggttacaccattgttgatcctaatcgaccaaagctatacagcccacaacagtatttacgt
actgaagaggaaatgtgtgagttattctcagatattcctgaagcgttggcgaacagtgtt
gaaatagcaaaacgttgtaatgtaacggttcgtcttggggaatacttcctgccgaatttc
cctactggggatctaagtactgaagatttcttggtggttaagtctcgcgaaggtttagag
cgacgtttagcgtacctttttcctgatgaagctgtacgtgtcgaaaagcgccctgagtac
gatgagcggcttgagattgaacttaaagtcatcaatcagatggggttccccggctatttt
ctgatcgtaatggagtttatccaatggtcaaaagataatgatgtgccagttggtccgggt
cgtggttcaggtgcgggttcattggtggcttacgcactcgatattaccgatcttgaccca
ttgaaatttgacttactgttcgaacgttttttgaacccagaacgtgtatcaatgcccgat
ttcgatatcgacttttgtatggataaacgggatttagttattgatcacgttgctgaaata
tatggtcgtgatgcggtatctcagatcattacgtttggtactatggctgcgaaagcggta
attcgagatgtagggcgagtactcggtcacccgtacggttttgttgatcgtctttctaaa
atgatcccggcagagcccggtatgacattggctaaagcctttgaggcagaaccgcaactt
ggggatgcctacaatgccgatgaagaagtaaaagccttaattgatatgtgtcgcatcctt
gaaggtgtaacacgtaatgcgggtaagcatgcgggtggtgttgtaatttcacccacgacg
atcactgatttctcaccactgtattgcgatgcagaaggtgctaaccctgttacccagttt
gataaaaatgatgttgaaaccgcaggcttggttaagtttgacttcttgggtctacgaaca
ttaactatcattgactgggcgttagctcttattaaccctcgtcgagaggctgaaggcaaa
gagccgatcaatattgcttcgattcctatggacgataaaaagtcatttgcgatgttgcag
cgctctgaatcgacagcagtgttccagttagaatcgcgaggaatgaaggatctgatcaag
cgtcttcaacctgatagctttgaagatatgatcgcactggtagcattgttccgtcccggt
cctttgcaatccggtatggtagataactttatcgaccgtaagcatggtcgagaagaagtg
tcataccctgatgccacttggcagcatgaatcgttgaaagagattctcgaacccacttac
ggcattatcttgtatcaagaacaagttatgcaaattgcacaggtactgtctggctacacc
ttgggtggggccgatatgttacgtcgtgcgatgggtaagaaaaaacctgaagaaatggcc
aagcagcgcaccacctttgaacaaggcgcggttaataacggggtcgatggcgaactcgcc
atgaagatcttcgacttggtagaaaaatttgccggttatggttttaataaatctcactct
gctgcgtatgccttggtatcgtaccaaacgctgtatttaaaagcgcattatcctgcagaa
ttcatggctgcggtaatgactgctgatatggataacaccgataaaattattggtttggtt
gatgaatgcttacgcatgaagataccgttactgccgcctgatgtgaataaagggctttat
cgatttaatgttgatgagcaaggcgcgattgtttatggtatcggcgcagtaaaaggtgtc
ggtgaagggccgatagaaaatttgattgaagcccgcgaaaaaggtggtcattttaaagat
ttattcgatttctgtgcgcgtattgacacaaaaaaagtcaataagcgtgtgcttgagaaa
ttgattaaatcaggtgcgatggatcgcttaggccctaaccgtgccactctgatggcgacg
ttgaacgatgccattaaagcggctggtcagcatcatcatgcggaagcctttggtcaggct
gatatgtttggtgtattgactgctgctcctgaagaggtcgagcaagcttatgccaatatt
ccagaatggccagataagatttggttggaaggtgaacgtgaaactctggggttgtactta
acaggtcacccgataaatgcctacatttcagagttaaagcattacaccacttggcgctta
aaagatgctaacccaacagggcgtgataaagtagcgtctgttgcagggttagtgattgct
gcacgcgttatgacaacaaagcgtggaacacgtattggtttaatgacactagatgatcgt
tcaggtcgtatggaagtcatgttattctctgatgcgcttgaacgttaccttgatttgctt
gaaaaagacaaaatagtggttgtttcaggacaggtcagctttgatgatttcaatggtggc
cttaaaatgtcagccagagaagtactggatatctctgaggcaagagaaaaacaccttaga
ggactggctatctcggtaacagaacagcaagtcgatgaacagttttttgcacgcttcagc
caagtgctggagcctcacagggcaggtacagtacctgttaatgtgtattatcagcgctcg
aatgcacgtgccaaactcactttaggaacagaatggcgtattacgccgtcggatcagtta
attctcgatctcaagttgctattaggtgagaagcaagtcgagcttgaatttaattaa
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