Photobacterium profundum: PBPRA3503
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Entry
PBPRA3503 CDS
T00173
Symbol
PLU0386
Name
(GenBank) putative DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03030
DNA replication
ppr03410
Base excision repair
ppr03420
Nucleotide excision repair
ppr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PBPRA3503 (PLU0386)
03410 Base excision repair
PBPRA3503 (PLU0386)
03420 Nucleotide excision repair
PBPRA3503 (PLU0386)
03440 Homologous recombination
PBPRA3503 (PLU0386)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppr03032
]
PBPRA3503 (PLU0386)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA3503 (PLU0386)
Enzymes [BR:
ppr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PBPRA3503 (PLU0386)
DNA replication proteins [BR:
ppr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PBPRA3503 (PLU0386)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PBPRA3503 (PLU0386)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBPRA3503 (PLU0386)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
CAG21774
UniProt:
Q6LLQ4
LinkDB
All DBs
Position
1:complement(3960508..3963321)
Genome browser
AA seq
937 aa
AA seq
DB search
MALFNLSSPGYKNISMATIPENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAVYGVVNM
LRSLLRQFSTEHIAVIFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLP
LIAISGVEADDVIGTLATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGV
VEKFGIGPELIIDYLALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALG
FRGSKTMPKKLADNKEAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFR
RWLSEMLDGSDGKIVADEKASEPVEKKVVAPTIDRSGYETILDEVSFKTWLDTLTAADVV
AFDTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDP
AQNKVGQNLKFDMSILARYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNIS
FEEVAGKGKKQLTFNQIDLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMP
LVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFE
KMGLPILKKTPSGAPSTNEEVLQELALDYPLPKILLEYRGLAKLKSTYTDKLPKMVNPST
GRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELR
IMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFG
LAKQLDMGRNEAQDYMNVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRN
GIRRKAAERAAINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQES
ELDAVSADVRRLMELAAELDVPLIADTGSGDNWDEAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
gtggcactttttaatctttcatctcccggatataagaatatctctatggcaactatccca
gaaaatccactcatcctgattgatggatcgtcttatctttatcgcgcttatcatgccgca
cctaatttcactaattcagatggtgaaccaacaggcgcagtatatggtgtggtgaatatg
ctacgcagtttattacgtcaattttcgactgaacatattgcagtgatcttcgatgctaaa
ggcaaaacattccgagatgatatttatccggaatataaggcaaatcgtccgcctatgcct
gatgatcttcgaggtcagattgagccattacatgctgtgatcaaagcgatgggtttaccg
ttgatcgcgatttcaggcgttgaagcggatgatgtgatcggaacattggcaacgcaggca
tcaaaagcgggtatgccagtactgattagtactggtgataaagatatggcacagctggtt
gatgaaaatgtcacgctgatcaataccatgactgatgtggtaatggggcctgctggggtc
gtagagaagtttgggatcggccctgagttgattattgattatctcgccctgatgggggat
aaagttgataatattcctggagtgccgggggtcggagaaaaaacagcaaaagcattgtta
acgggggttggtggtcttgatgctatttatgacaatttagacgctattcctgctcttggc
tttcgtggttctaaaacgatgcctaaaaagctggctgataataaagaagcggcttatatg
tcgtatgagcttgcaaccatcaaattggatgtagagctagacagtgcaccgcatgaactg
ttgaagactgaacctgacactgatgaattaaccagtttatttggtaaattacagttccgt
cgttggttatctgaaatgctagacggtagcgacggtaaaatcgtggctgacgagaaagcg
tcagagcctgtagaaaagaaagtggtcgcaccgacgattgatcgtagcggttacgaaact
attctcgatgaagtaagctttaaaacgtggctcgatacgttaactgcagcagacgttgtt
gcttttgatacagaaactgacagccttgattacatgacggctaacttagtcggtgtatca
tttgctgtcgaagaagggaaagcggcgtatgttcccgttgcgcatgattatcttgatgcg
cctgaacagcttgatcgtgattgggtacttgctcaactaaaaccgctacttgaagatccc
gctcaaaataaagtcggtcaaaacctaaaatttgatatgagcatcttggcacgttacgac
attaatatgcagggtatcaaatatgacaccatgcttgagtcatacgtgttcaatagtgtg
gttggccgccatgatatggatagcctagcactacgttacctagaacataaaaatatcagt
tttgaagaagttgccggtaaaggtaaaaagcaattaacgtttaatcaaattgatttggat
gttgctgggccttatgccgctgaagatgctgatattacgctgcgcttacataatttattg
aacgaaaaagttgaatctgatgagcagctaaagtctgtatttgaagatattgaaatgccg
ttggtgcccgtactatctcgtattgagcgtactggtgtattaattgatagcatgctattg
agtgcccaatcgacagaaattgctgcgcgccttgatgaattagaaaccaaagcgtacgag
attgcagaacaagagtttaacttaagttcgccgaagcagctgcaagctatcttgtttgaa
aagatgggtttacccattttgaaaaagaccccgtctggtgcgccttcgactaatgaagaa
gtacttcaagaactggcgttagattacccattaccgaagatacttttagaataccgtggt
ttagctaagctgaaatccacctatactgataagttacctaagatggtgaatccgtcgact
gggcgagtacatacttcataccatcaagcggtaaccgcaacgggacgtttatcttctagc
gatcctaacttacagaatattccggtccgtaatgctgaagggcgtcgtattcgccaggca
tttattgcccctacaggctataagatccttgctgtcgattactcgcaaatcgagttacga
attatggcgcatttatcgggtgataaagcgttattagaagcctttaaacaaggcaaagat
attcacgcagcaaccgcagcagaaatcctaggcttaccgattgaatcagttaccactgaa
caacgtcgtcgtgctaaagcgattaactttggtttgatttatggcatgagtgcgtttggt
cttgctaagcaattggatatgggacgtaatgaagcacaagactatatgaatgtgtatttt
gaacgttaccctggcgtgttggaatatatggaaagcacccgaattcatgcgagtgagcaa
gggtatgttgaaaccttgtttggacgacgtttgtacttacctgatattaaatctcgtaat
ggtatacgtcgtaaagctgcagaacgtgcagcaatcaatgcgccgatgcaaggaaccgct
gctgatattattaaacgtgcgatggtattggttgatgagtgggttgaacaacaagaaaca
gggcgtgttcgtctattaatgcaagtacatgacgaacttgtctttgaagtacaagaatct
gagttggacgctgtctctgctgatgtacgtcgcttaatggaactagcggctgaattagat
gtacctctgattgcagatactgggtctggtgacaactgggatgaggcgcactag
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