Photobacterium profundum: PBPRA3508
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Entry
PBPRA3508 CDS
T00173
Symbol
S3855
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBPRA3508 (S3855)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppr03019
]
PBPRA3508 (S3855)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA3508 (S3855)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBPRA3508 (S3855)
Messenger RNA biogenesis [BR:
ppr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBPRA3508 (S3855)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBPRA3508 (S3855)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAG21779
UniProt:
Q6LLP9
LinkDB
All DBs
Position
1:complement(3966664..3968511)
Genome browser
AA seq
615 aa
AA seq
DB search
MSSSSTAVCEPTPLAPSEKILQDVFGYQSFRIGQQEVIEAVVEGQDCLVIMPTGGGKSLC
YQIPALIMPGITLVISPLISLMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDL
KLVYVSPERVLMRDFIERLYETPLSMVAVDEAHCVSQWGHDFRPEYAALGTLKQHFENLP
IMALTATADDTTRNDITSRLGLTNPHDYLGSFDRPNIRYTLLEKHKPMTQLTRYLTGVRG
QCGIVYCNSRKRVEQIAGKLRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAF
GMGINKPNVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKE
EGAQKQVESHKLNAMGAFAEAQTCRRQVLLNYFGEYREEPCGNCDICLDPPKRFNAIEVA
QKALSCVYRVNQSFGVGYVVEVLRGMQNQRIREHGHDKLTTYGIGREHSHEYWVSILRQL
IHRGFLTQNILRSSTLQLTEKARSVLRAEIELELAVPRLDVAARSAKSDKMANRHYDKKL
FAKLRKLRKAIADEEDLPPYVVFNDASLMEMAEILPTSQGEMLAINGVGHRKLEKYGSVF
LGVIEEHLMAGISER
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagcagtaccgcggtttgtgagccaacgcccttagcgccaagtgagaaaatc
ttacaggatgtgtttggctatcaatctttccgtattggtcagcaggaagtgatagaagcc
gttgtagaaggtcaagattgcttagtcatcatgccaacggggggcggtaaatcgttgtgt
taccagatccctgcattaatcatgcccggtattaccttggttatctcaccgcttatctca
ttaatgaaagatcaagtcgatcagttgaatgccaatggggtggcagcggcgtatatcaac
tcaaccatgtcgcgtgaagaagtgatggagactttcttagcaatgcgagagggggatttg
aagttagtctacgtatcgcctgaacgggtattgatgcgtgattttatcgagcgattgtat
gaaaccccgttaagcatggtagccgttgatgaagcgcactgtgtttctcaatgggggcat
gatttccgccctgaatatgccgcattaggcaccttgaaacaacactttgaaaacttgccg
atcatggcattgacggcaactgctgatgataccacccgtaacgatattaccagtcgtctt
ggtcttaccaacccccatgattatctcggtagttttgatcgccctaatattcgttatacc
ttgcttgaaaagcacaaaccgatgacgcagctcacccgttacttaacgggggtacgtggt
caatgtgggatcgtgtattgcaatagtcgtaaacgcgtcgagcaaatagcaggaaaattg
cgtgatagtggggtacgagcagctgcgtatcacgcagggctcgatcatgatgaacgaggg
cgagtacaagaaagctttcaacgtgatgatattcatattgtggttgccaccgtggccttt
ggcatggggatcaataaacccaacgtccgctttgtcgtgcactacgatattccgcgtaat
atcgagtcgtattatcaagaaaccgggcgagcagggcgggatggattacctgcagaagcg
gttatgttttatgatccatcagacttagcttggttacgccgttgccttgatgaaaaggaa
gaaggggcacaaaagcaagtcgaaagtcataagttaaatgcaatgggggcatttgccgaa
gcgcaaacatgccgccgtcaggtattactgaattactttggtgaataccgtgaagaaccg
tgcggcaactgtgacatttgtttagacccgcctaagcgttttaatgcgattgaagtggca
cagaaagctttgtcgtgtgtataccgtgttaatcaaagctttggtgtgggttacgtggtg
gaagtgctgcgtggtatgcaaaaccaacggatacgcgaacatgggcacgacaagctcaca
acgtatgggattggacgtgaacatagccatgaatattgggtgagtattttacgccagctg
atccatcgcggatttttaactcaaaatattttgcgcagttcaaccctacaattaaccgaa
aaagcgcgctcagtattacgtgctgaaattgagctagagctagcggttcctcggcttgat
gtggcagctcgtagtgcgaaaagcgataagatggcaaatcgtcattatgataagaagctg
tttgctaaattacgtaagttacgtaaagccattgcagatgaagaagatttaccaccttat
gtcgtgttcaatgatgcaagcttaatggaaatggctgaaattttaccaacatctcaaggt
gaaatgttagcgattaatggcgttgggcatcgcaaactagaaaaatacggcagtgttttt
ttaggggtgattgaagagcatttgatggctgggatcagtgagcgataa
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