Photobacterium profundum: PBPRA3513
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Entry
PBPRA3513 CDS
T00173
Symbol
SF3891
Name
(GenBank) putative ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03420
Nucleotide excision repair
ppr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBPRA3513 (SF3891)
03430 Mismatch repair
PBPRA3513 (SF3891)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA3513 (SF3891)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBPRA3513 (SF3891)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBPRA3513 (SF3891)
MMR (mismatch excision repair)
Other MMR factors
PBPRA3513 (SF3891)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
YccJ
Motif
Other DBs
NCBI-ProteinID:
CAG21784
UniProt:
Q6LLP4
LinkDB
All DBs
Position
1:complement(3973445..3975619)
Genome browser
AA seq
724 aa
AA seq
DB search
MDVSLLLDGLNDKQREAVAAPLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSVMSV
TFTNKAAAEMRGRINELMEGSSAGMWNGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQM
RLLRRLIKAQNLDEKHWPARQAAWYINGKKDEGLRPANIDAFNDPVEKTWLRIYTAYQEA
CDRAGLVDFAELLLRAFELVRDNKHIREHYQARFKHILVDEFQDTNNIQFAWLRLMAGVD
CNVMIVGDDDQSIYGWRGAQVENIQRFLRDFTNASSIFLEQNYRSTGNILNAANELIANN
NERMGKKLWTDGEDGELISLYSAFNELDEARFAVGKIKEWRNEKGGSLSDTAFLYRSNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEVKDSLAYLRLMANRNDDASFERVVNTPTRGLG
DRTLETIRLAARDRSVTMWQASVSLLEEQVLAGRAANSLRRFIELVNALEDDTRDLPLFQ
QTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVVPEEAEEMTPLAAFLSHAA
LEAGEGQADDFEDAVQLMTMHSAKGLEFPIVFMVGVEEGMFPSSRTTEEVGRLEEERRLC
YVGMTRAMKKLYITYAEMRRLYGKDNFHKPSRFIREIPTEFVEEVRMKAQVSRPASSGRF
SQTQVNDNFNQTGFNLGQRVKHPKFGEGTIINFEGSGAQSRVQVAFNGEGIKWLVTQYAK
LDPM
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcactcctgttagatgggctcaatgacaaacaaagagaagcggtggctgca
ccgttaggaaaccaccttgtactagcgggagcgggcagtggtaaaacccgagtgctcgtt
catcgtattgcgtggttaatgcagatagagcaagcatcgtcgtactcggtcatgtctgtg
acgtttaccaataaagcggcggctgaaatgcggggtcgaattaatgagttaatggaaggc
tcatcggcgggtatgtggaatggtacgttccacggtttatgccatcgcatgttacgtgcg
cattatcttgatgcgcgtttacctgatgatttcaatattcttgattctgatgatcaaatg
cgtctgttacgccgtttgattaaagcgcaaaatcttgatgagaaacactggccagcacgt
caagcagcgtggtatatcaacggtaaaaaagacgaaggtttgcgccctgccaatatcgat
gcttttaacgatccggttgaaaaaacatggttgcgtatttataccgcctaccaagaggcg
tgtgatcgcgctgggttagtcgattttgctgaattgttgttacgcgcttttgaattggtt
cgtgacaataaacatattcgtgaacattaccaagcgcgtttcaagcacatcttggttgac
gaatttcaagataccaacaatatccaatttgcatggctgcgcttaatggcgggtgtagat
tgtaatgtgatgatcgtgggtgatgatgatcagtctatatatggctggcgtggtgctcag
gttgaaaacattcaacgcttcttgcgtgattttaccaatgcatcgtccattttccttgaa
caaaactaccgttctaccggcaatattctaaatgctgccaacgaattaattgccaataac
aatgagcgtatgggcaagaagttatggacggatggtgaagacggtgagttgatttcgctg
tactctgcttttaatgaattggatgaagcccgctttgcggtgggtaaaatcaaagaatgg
cgtaatgaaaaaggcggttcgttaagcgatacggcctttttataccgtagcaatgcacaa
tctcgtgtattggaagaagccttaattcaagcgggtttgccgtaccgaatttatggtggt
atgcgtttcttcgaacgtcaggaagtgaaagattcattggcgtatctgcgtttaatggcc
aaccgaaatgatgatgcctcttttgagcgagtggtgaatacccctacgcgtggcttgggc
gatcgtaccttagaaaccattcgtttagctgcccgtgatcgcagtgtcactatgtggcaa
gccagtgtctcactgcttgaagagcaagtgctggcaggccgtgctgcgaactcattacgt
cgtttcatcgagttggtgaatgcactggaagacgatacgcgagacttacctttgttccag
caaacggatgatgtgatccgtaattcgggtttgcgtgcaatgtacgagcaagaaaaaggc
gaaaaagcccaagctcgtatcgaaaacttggaagagttagtcacggcaacccgtcaattt
gtcgtgccagaagaagcggaagagatgacgccattagcggcgtttctgtctcatgcggca
ctagaagctggtgaaggtcaggccgatgactttgaagacgcggtgcagctaatgaccatg
cacagtgcgaaagggttagagttccctattgtcttcatggtgggtgttgaagagggtatg
ttcccgagttcacgcaccacggaagaagtcgggcgcttagaagaagaacgtcgtttgtgt
tacgtcggtatgacccgtgcaatgaagaagttgtacatcacttatgctgaaatgcgccgt
ttatacggtaaagataatttccataagccatcacggtttattcgtgaaattccaacggag
tttgtggaagaagtccgaatgaaggcacaagtctctcgccccgcaagcagtggacgcttt
agccaaacccaagtgaatgataactttaatcaaactggttttaatttaggacagcgtgtt
aagcaccctaaatttggtgaaggtaccatcattaactttgaaggcagtggtgcgcaaagt
cgtgttcaggtcgcttttaatggtgaaggtattaagtggctagtgactcagtacgctaag
ctggatccgatgtaa
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integrated database retrieval system
