Photobacterium profundum: PBPRA3540
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Entry
PBPRA3540 CDS
T00173
Symbol
Y0361
Name
(GenBank) putative transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
ppr
Photobacterium profundum
Pathway
ppr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBPRA3540 (Y0361)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppr03021
]
PBPRA3540 (Y0361)
03019 Messenger RNA biogenesis [BR:
ppr03019
]
PBPRA3540 (Y0361)
Transcription machinery [BR:
ppr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PBPRA3540 (Y0361)
Messenger RNA biogenesis [BR:
ppr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PBPRA3540 (Y0361)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
CAG21811
UniProt:
Q6LLL7
LinkDB
All DBs
Position
1:complement(4003147..4004514)
Genome browser
AA seq
455 aa
AA seq
DB search
MHINCYSVHFLTSPLVNSILNQNRTPILTDKKPTTMNLTELKSQPIPKLVALSESLGLEN
LARLRKQDIIFSILKQHAKGGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQ
IRRFNLRTGDTVAGKIRPPKDGERYFALLKVNAVNYDKPDNARNKILFENLTPLHANDRM
RMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTILLQNIAQSIAHNHPECVLM
VLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLD
SITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGS
KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDFNRSGTRREELLAKPDELQKMWILRK
IVHPMGETDSMEFLIDKLSMTKTNNEFFDAMRRQK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcacataaattgctattccgttcatttcttgaccagccccttggtcaactctatctta
aaccaaaatagaaccccgattttgacagacaagaaacccaccactatgaatcttacagaa
ctgaagagccaaccaattccaaagttggttgcacttagcgaaagcttgggcctagagaat
ctagcgcgcttgagaaaacaagacattatcttctctattctcaaacaacacgcgaaaggt
ggtgaggatatttttggcgatggtgttctagaaatccttcaagatggcttcggcttcctt
cgctcttcagatagttcttaccttgctggccctgatgatatttatgtatctccaagccag
attcgtcgtttcaaccttcgtactggcgataccgttgccggaaaaattcgtccaccgaaa
gatggcgaacgttattttgcactacttaaagtaaatgcagttaactatgacaaaccagac
aacgcacgtaataagatcttatttgaaaacctgactccactgcacgcgaacgatcgtatg
cgtatggagcgtggtaacggctcgactgaagatatcactgcacgtgttcttgatttagca
tctccgattggtaaaggtcagcgtggtctgattgttgctccgcctaaagcgggtaaaacc
attttgcttcaaaacattgcacaaagtattgcccacaaccaccctgagtgtgtgttgatg
gttttacttatcgacgaacgtccggaagaagtaaccgagatgcaacgcctcgttaaaggt
gaagttattgcatcaacgtttgacgagccagcatcacgtcacgtacaagtggcagaaatg
gttatcgagaaagcaaaacgtcttgttgaacacaagaaagatgttgttatcctgcttgac
tcaatcacacgtctagcgcgcgcatacaacaccgttgttccttcatctggtaaggtactt
acaggtggtgttgatgctaacgcccttcaccgacctaagcgtttcttcggtgcggcacgt
aatgttgaagaaggtggtagcttaacaatcatcgcgacagcattggttgataccggctct
aagatggatgaagttatctacgaagagtttaaaggtacaggtaacatggaattgcaccta
tctcgtaagattgctgagaaacgtgtattccctgcgattgacttcaaccgttctggcact
cgtcgtgaagagttattggctaagcctgacgaattacagaaaatgtggatcctgcgcaag
attgttcacccaatgggcgaaactgacagcatggaattcctgatcgacaaactgtcgatg
acgaagacgaataatgagttctttgacgcaatgcgtcgtcagaaataa
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