Photobacterium profundum: PBPRB0212
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Entry
PBPRB0212 CDS
T00173
Symbol
CV2853
Name
(GenBank) putative ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppr
Photobacterium profundum
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppr03009
]
PBPRB0212 (CV2853)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PBPRB0212 (CV2853)
Ribosome biogenesis [BR:
ppr03009
]
Prokaryotic type
rRNA helicases
PBPRB0212 (CV2853)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
Cas3-like_C_2
AAA_22
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAG22085
UniProt:
Q6LLC1
LinkDB
All DBs
Position
2:237697..239085
Genome browser
AA seq
462 aa
AA seq
DB search
MSQTAFSTLNLHADLLKNLTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGL
GLLEKLNVKRFRVQSLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSL
EHGAHIIVGTPGRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQ
TLLFSATYPPQIKSVADRIMHKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLLK
HRPESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVAT
DVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLED
YLDRAISGEPLPSMDLLDQPTFRPAMTTLQIDGGKRQKIRPGDILGALTGESGIAGAQVG
KIQIFDNFAYVAVKSESVRAAMKKLEDGKLKGRSFRVRQIRG
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaacagctttttctactctaaacctgcacgcggatttgctaaaaaatctgact
tctcttggttacgagtcaatgactcctattcaagcgctgagcttaccgcatatcttggcg
ggcgaagatgttatcgctcaaggtaaaacgggctcaggcaaaacagcagcctttggtctt
ggtctattagaaaaattgaacgtgaaacgttttcgtgttcagtctttagtactttgtcct
acgcgtgaacttgctgatcaagtagcaaaagaaatccgtaaacttgcacgtactattcat
aacatcaaagtattgacgttatgtggtggtatgccgtttggtccacaaattggttcgcta
gagcatggcgcacacattattgtgggtacaccgggtcgtattgaagagcacgtacgtaaa
ggcacgttgaaccttgatgatctagaaatacttattctagatgaagctgaccgtatgtta
gagatgggtttccaagattcattagatgaaattattgatgcagcccctcagcgtcgtcaa
acattactattcagtgcgacatatccacctcagattaagtctgttgctgatcgtattatg
cacaagcctgtgatggcgaaagttgaatcaacgcatgatgaaagcactattcagcagcat
ttctataaagtagatggtaacgagcaacgtttaacggctttacgtttattactgttaaag
caccgtccagaatcgacagtggtattctgtaacactaaacgtgaagcgcaagaagtatca
gacgatttagtggattatggtttcagctcaattgccctacacggcgatttggagcaacgt
gaacgtgaccaagcattggttctttttgctaacaaaagtacatcagtattagttgcaaca
gatgttgcggctcgtggtctagacattgattcacttgatgccgtgattaactaccacctt
gctcgtgatacagaagtacacgttcaccgtattggtcgtacaggccgtgcgggtagtaaa
ggtattgcatgttctttaattagtgataaagaacactacaaagtagccatgcttgaagat
taccttgatagagcaatcagtggcgagccattaccttcaatggatctgcttgatcagcca
acattccgccctgcaatgacaacactgcaaattgatggcggtaagcgtcaaaagattcgc
cctggtgatattcttggtgctctaacaggtgaaagcggtattgctggtgcccaagttggt
aaaattcaaatttttgataactttgcgtatgttgctgtgaaaagtgaatcagtacgtgcg
gcaatgaagaaattagaagacggtaagctgaaaggtcgttctttccgcgttcgtcagatt
cgcggttaa
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