Photobacterium profundum: PBPRB0427
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Entry
PBPRB0427 CDS
T00173
Symbol
PLU4523
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBPRB0427 (PLU4523)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppr03019
]
PBPRB0427 (PLU4523)
03009 Ribosome biogenesis [BR:
ppr03009
]
PBPRB0427 (PLU4523)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBPRB0427 (PLU4523)
Messenger RNA biogenesis [BR:
ppr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBPRB0427 (PLU4523)
Ribosome biogenesis [BR:
ppr03009
]
Prokaryotic type
rRNA helicases
PBPRB0427 (PLU4523)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAG22300
UniProt:
Q6LK80
LinkDB
All DBs
Position
2:498315..500186
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AA seq
623 aa
AA seq
DB search
MLESVTEFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAF
SLPVLNKVDLSQHKPQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPAS
AQRVLFSATMPPIVKQIVDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRML
ETEENIDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVL
VATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRT
IERVTKSRMEEIQLPNRDAVAAARLTRLGQELESQKEQATLEAFVELVGKLQETIDVDAT
TLAAMLLQRQQGNRPLFYKGPDPMIAAIDREQQRRERRGNDDRGTRNERGGERRSNNSAD
WDTYQLQVGREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQLPKKMSAEVSAQL
KKLRIRQNDVKAVVVEGEVLREHRPRNSGSRDGGRGGYRGNRDSNGGERRFDRNRGSDNR
GGNRGSANSDRPRRPSGERSNNA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgctagaatctgttacagaatttcgccaattagatttggctgacacacttttatctgct
cttgactcaatgggcttcgtttcgccaactcctattcaggcggcgtcaattcctctactt
cttactggtgttgatgcacttggtaaggcacagactggtactggtaaaacggctgcgttt
tcactacctgttctaaataaagtagacctttctcagcataagcctcaggctatcgtaatg
gctcctacacgtgagcttgcgattcaggttgctgcagaaatcaaagtccttggtcagaac
attaaaggtcttaaagttttagagatttacggtggtgcttctatcgttgatcaaatgcgt
gcacttaaaaatggtgctcacattgttgttggtactccaggtcgtgttaaagaccttatt
tcacgtgatcgtctgcaccttgatgaagttagtacgtttgtactagatgaagctgacgaa
atgttgaaaatgggttttgttgatgacgttacttggatcatggaacaagctccagcatcg
gcacaacgcgtattgttctcggctactatgcctccaatcgttaagcaaattgttgaccgt
ttcctacgtaacccagagcgcattgacgtagctggcgaaaaccgtactgtatctcaagtt
tcacagcagttctggatcgttaaaggcgtagaaaaagacgaagcaatgattcgtatgctt
gaaactgaagagaacatcgatgcgtcaatcgtattcgttcgtactcgtcaagatactgag
cgtctagctgattggttatctgcacgtggctgtaaagcagcagctctacacggtgatatt
cctcagtctttacgtgagcgtactgttgaccatattaaacgtggtgtaatcgacgttctt
gttgcaactgacgttgttgctcgtggccttgatattcagcgtattacacacgtatttaac
tacgacattccgttcgatgtagaatcttacatccaccgtattggtcgtactggtcgtgct
ggtcgttctggtaaagcgatcctattggttcgtacaaaccaaattcgtatgctacgcact
atcgagcgtgtaactaaatctcgtatggaagaaattcaacttcctaaccgtgatgccgtt
gccgctgctcgcttgactcgtttaggtcaagaactagaatcacagaaagaacaagcaacg
cttgaagcttttgttgaactagtgggtaaattacaagaaacaatcgatgttgatgcaaca
acgcttgcagcgatgcttcttcagcgtcaacaaggtaaccgtcctttattctataaaggt
ccggacccaatgattgcagctattgatcgtgaacagcaacgtcgtgagcgtcgtggtaac
gatgatcgtggtactcgcaacgaacgtggcggtgaacgtcgttcaaacaacagcgctgat
tgggatacttaccaattacaagttggccgtgagcaaggcattcaggttaaagatatcgtt
ggcgcaattgcaaacgaacttggcctaagcaaagagttcattggtgctattaaactagct
ccttcacatacttttgttcagcttccgaagaagatgtcagcagaagtttcagcacaactt
aagaagctacgcattcgtcaaaacgatgtaaaagctgttgttgttgaaggtgaagttctt
cgcgaacaccgtccacgtaacagtggtagccgtgatggcggccgtggtggataccgtggt
aaccgtgatagcaacggtggcgagcgtcgtttcgaccgcaaccgtggtagtgacaaccgt
ggtggaaaccgtggcagcgcgaacagcgaccgtccacgtcgtccaagcggtgagcgtagc
aacaacgcttaa
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integrated database retrieval system
