Photobacterium profundum: PBPRB0642
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Entry
PBPRB0642 CDS
T00173
Symbol
VC2213
Name
(GenBank) hypothetical outer membrane protein OmpA
KO
K03286
OmpA-OmpF porin, OOP family
Organism
ppr
Photobacterium profundum
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppr02000
]
PBPRB0642 (VC2213)
Transporters [BR:
ppr02000
]
Other transporters
Pores ion channels [TC:
1
]
PBPRB0642 (VC2213)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OmpA_membrane
OmpA
OMP_b-brl
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
CAG22515
UniProt:
Q6LJL5
LinkDB
All DBs
Position
2:765310..766284
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AA seq
324 aa
AA seq
DB search
MSKMNYILPLALLISGVVNAATENPWYAGARVGGTSYSGLSIDSRSSDIDKEDWGGGAFL
GYNIVPWFAVEGGYTYLGEMDFKADDASIEQQGLDLVGKFTWNVTNSIDLFAKAGGFYYF
TDGSGAISGSDDGIIGTAGVGAEYFFNKNLSARLEYQYYNDLELKDASWDTHFYGISLVY
GWGAPVPVAVVEPEPEPAPVPVMVQVEPITVALPFAFDSDTLSQQDIDQLQPIAQRLVNF
PETELFVIGHTDSRGAEAYNQNLSEERAAVVAGYLATHFGIEQSRIQAQGRGELEPVATN
DTEDGRGQNRRVEVFTPGFEMEGQ
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaatgaattacatactcccacttgcgttacttatttctggtgtagttaacgct
gccacagaaaatccgtggtatgcaggtgctcgagtcggcggtacgagttacagcggcctc
tctattgatagtagatcaagtgacattgataaagaggattggggaggtggtgcattctta
ggatataatattgtgccgtggtttgctgttgaaggtggttatacttacctgggggaaatg
gattttaaagctgacgatgcatcaattgagcagcaaggtcttgatcttgtcggcaagttt
acatggaatgtaactaactcaattgatttgtttgctaaagcgggtggtttctattacttc
accgatggcagcggtgcaattagtggctctgatgacggtattattggtactgctggtgta
ggtgctgaatacttcttcaataagaacctatcggcacgtcttgaatatcaatattacaat
gatctagaacttaaagatgctagctgggatactcatttctatggtattagcttagtgtat
ggctggggcgctcctgtaccggttgctgttgttgaaccagagcctgaaccagcacctgtt
cctgtaatggttcaagtagaaccaatcacagttgcactgccgtttgcatttgatagcgat
acgttatctcagcaagacattgatcagttacagcctattgcgcagcgtctggttaacttc
ccagaaactgaactatttgttatcggtcacactgatagccgtggtgcagaagcgtataac
caaaatctatcggaagaacgtgcagcagtggttgctggttatttagcaacacactttggc
attgaacagagtcgaattcaggcgcaaggtcgtggtgaactagagcctgtcgcgacgaat
gatactgaagatggtcgtggtcaaaaccgtcgtgtagaagtatttacacctggttttgag
atggaaggtcagtaa
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