Photobacterium profundum: PBPRB0763
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Entry
PBPRB0763 CDS
T00173
Symbol
VV21360
Name
(GenBank) putative formate dehydrogenase, alphasubunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
ppr
Photobacterium profundum
Pathway
ppr00630
Glyoxylate and dicarboxylate metabolism
ppr00680
Methane metabolism
ppr01100
Metabolic pathways
ppr01120
Microbial metabolism in diverse environments
ppr01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
PBPRB0763 (VV21360)
09102 Energy metabolism
00680 Methane metabolism
PBPRB0763 (VV21360)
Enzymes [BR:
ppr01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
PBPRB0763 (VV21360)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Pyr_redox_2
Fer4_20
Molybdop_Fe4S4
Fer2_4
Pyr_redox
Pyr_redox_3
Fer4_7
NAD_binding_8
Fer4
Fer4_8
Fer4_6
DAO
Fer4_2
Fer4_15
Fer4_9
Fer4_16
Fer4_18
Thi4
FAD_oxidored
NADH-G_4Fe-4S_3
FAD_binding_2
NAD_binding_7
Amino_oxidase
HI0933_like
Fer4_10
Fer4_21
Fer4_3
FAD_binding_3
SET_assoc
Motif
Other DBs
NCBI-ProteinID:
CAG22635
UniProt:
Q6LJ95
LinkDB
All DBs
Position
2:890820..895004
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AA seq
1394 aa
AA seq
DB search
MPRTIKRQSMINVTIDGQKFPVNAQQTLLEAAADCNIEIPSLCGLNKNGEKVPCELCVVD
VAGQGIQRACEILPVENMIVTTVSEELSSLRQTALNRILSDHYADCEAPCQTACPAGVDI
QSYLYHISQDDHVKAVEVIKRTLPMPLSIGRVCPAFCETECRRGLVDEPIAIRQLKRHAA
DIDLAAQENYVPPKKASKGMSIAVVGSGPGGLTCGYYLTNEGYDVTVFESMPEAGGWLRY
GIPEYRLPKAILAKEIELMCRNGMQVLTSKKLGDDFTLTQLTEDYDAVCLAVGASQAVEM
NYTGSDLNGCYLGVDYLKDYVTEGCYITGKKVAVIGGGNTAIDCARTAVRDGADTTLIYR
RTRDEMPAEDYEIVEAEHEGVKFHFLTNPVENIADANGHVCEIKLEKMALGEADASGRRR
PEPTGKYFTEAFDTVIAAVSQKPDLSFMDKEELDLPLTRWNTQDANPNTMHSGLGNVFSI
GDFRRGPATAIEAVADGRIAAEAIDRFFDGDMENIPVKLFNSQKERKLKQVAPEQFVEIK
KVMRSVMPELSTKERELSFSEVETGFNNDEAMREAARCLECGCQANTDCKLRDYATEYDV
AETELTNESCQKFHVDDSSEFIVFDANRCISCGQCVEACNEKAVHGTLSFAKNADGSSAS
RPECRPGFDKGYSMGDSNCVQCGACVQVCPTGALVDKRDKSQGRIEMLKPVETICTYCGV
GCKLTMYVDESLNQIRYVQGVKDSPVNQGMLCVKGRFGFDFVNSKERLTTPLIRKNGELQ
PASWEEAISLVADKFNAIKADRGGNALAGFSSAKTTNEDNFAFQKFIRRELETNNVDHCA
RLCHASTVTGLEASIGSGAMTNDIPSIKFSDVVFIIGSDTTAAHPIIASHIKQAIRTGKT
RLIVADPKRIDIADHSDLYVAHRPGTDVMLMNGIMQQIIKNDWHDKTYINERTEGFEALK
AEVMLDSYAPDKVELVTGVKAQDVIKIAQMIGTANRTAVYYSMGITQHTTGHDNVRSVAN
LQMLCGNIGIEGGGINPLRGQSNVQGACDMGALPNNFPGYQKVQVPEIHAKFAKAWNKPN
LPKEDGLTLTEIIDAACHDQVKGLYVMGENPVLSDPNQAHVIEGLEKLDFLVVQDIFLTE
TAQYADVVLPSCSFAEKSGHFTNTERRVQRISPAVNPPGEAKEDWWIIQSIANAMGSDWA
YQSVKDITEEITQLTPQYAGIHWDRVGRDGLQWPCNDNAPDGTRVMHTSQFTRGKGEMAA
IPFRYAAELPDAEYPLILTTGRLLEQFHTGSMTRKTKGLDNLAGPRAMISVVDAERLGVR
NGEMLKVSTRRGSIETPAFVTKRMQEGVVFVPFHFAEAPANRLTTTATDPHAKIPEFKVA
AVKIEKVRVLVETC
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagaaccataaagaggcaatcaatgataaatgtcacgatagatggacaaaaattc
cccgtaaacgcgcaacaaaccctactcgaagctgcagctgactgtaatattgaaataccg
tcactttgtggtctcaataaaaatggcgagaaagtgccttgtgaactttgtgtcgtcgat
gtagctgggcaaggtattcaacgtgcctgtgaaattttacccgttgaaaacatgattgtg
accactgtttctgaagaactgtcttcgctacgtcaaacagcactaaaccgtattctttct
gatcactatgccgattgtgaggcgccgtgccaaacagcatgtcctgctggcgtagatatt
caatcttatctttaccatatttctcaagatgatcatgttaaagcggtggaagtcattaaa
cgaacactgcctatgccgttatccattggccgtgtttgccctgcattttgtgaaactgaa
tgccgtcgtggtttagtcgatgaaccaatcgccattcgccagcttaaacgacatgcagcc
gatatagatcttgctgcacaagaaaattatgtaccgccaaagaaagcatcaaaaggtatg
tccattgcagttgtaggtagtggccctggcggcttaacgtgtggctattatctaacaaac
gaaggttacgatgtaacagtatttgaatcgatgcctgaagcgggtggttggttacgttac
ggtatacctgaataccgtttgcctaaggctattttggcaaaagaaattgagctaatgtgc
cgaaacggcatgcaagtactgacctcgaagaagttaggcgatgatttcacactcacgcaa
ctaacagaagattatgatgcggtatgccttgcagttggtgcttctcaagccgtagaaatg
aattataccggtagtgatcttaatggttgttatttgggcgttgattacctgaaagattac
gtcactgaaggttgttacattacgggtaaaaaagtagccgttattggtggaggtaatact
gccattgactgtgcacgaacagctgtacgtgatggtgccgataccacgcttatttaccgt
cgtacacgtgatgaaatgcccgctgaagattatgaaattgtagaggccgagcatgaaggc
gttaaatttcacttcttgacaaacccagttgagaatattgctgacgcgaatggtcacgtg
tgtgaaattaagctagagaaaatggcattgggtgaggctgatgcatctggtcgtcgtcga
ccggaaccgacaggtaaatactttaccgaagcgtttgataccgttattgccgcggtttcg
caaaagcctgatttaagcttcatggataaagaagaattagatctgccattaacgcgctgg
aatactcaagatgctaatccgaataccatgcactcaggtttaggtaatgtattcagtatt
ggtgatttccgtcgtggacccgcaacagccattgaggcggttgcagatgggcgcattgct
gcagaggcgattgaccgcttcttcgacggtgatatggaaaacattccagttaagcttttt
aattcacaaaaagagcgcaagttgaaacaggttgctcctgagcagtttgtagagattaaa
aaagtaatgcgctctgtaatgccagaattgagcacgaaagagcgagagttaagctttagt
gaagttgaaacggggtttaacaatgacgaagcaatgcgcgaagctgcacgttgtttagag
tgcggttgccaagcaaacaccgattgtaagttacgtgactatgcgaccgaatatgatgtt
gcagaaaccgaattaaccaatgagagttgccagaagttccatgtagatgatagctctgaa
ttcatcgtgttcgacgctaaccgttgcattagttgtggtcagtgtgttgaagcctgtaat
gaaaaagcggttcatggcacgctaagttttgcaaaaaatgctgatggttcaagtgcgagc
cgccctgaatgccgccctggctttgataagggctacagtatgggtgactctaattgtgtt
caatgtggggcatgtgttcaagtgtgtcctactggcgcactggtcgataagcgagataag
tcgcaaggtcgaatcgaaatgctgaagccggttgagacgatttgtacctattgtggtgtg
ggttgtaagctgacgatgtatgtcgatgaatcattaaatcagattcgttatgtacaaggc
gtaaaagattcgccagtaaaccaaggtatgttatgtgttaaaggacgctttggttttgat
tttgtaaatagcaaagagcgtttaacaaccccgctaattcgtaaaaatggtgaattacag
ccagccagttgggaagaggctatttcgctggtcgctgataaattcaatgcgattaaagcc
gatagaggcggcaatgcgttagcgggtttctcatcggcgaaaaccaccaacgaagataac
tttgcattccaaaagtttattcgtcgagaattagaaacgaataacgtcgatcactgtgca
cgtttgtgtcacgcatcaacagtaacaggattagaagcgtcaattggtagtggcgcaatg
accaatgacattccaagcattaagttctctgatgtggtgtttatcattggttccgatacg
accgcggcgcacccgatcattgcatcacatatcaagcaagcgattcgtacgggtaaaaca
cgtttaatcgtggcagatcctaaacgtattgatattgccgatcattccgatttgtatgtt
gcacatcgtccgggtacggatgtgatgctaatgaacggcatcatgcagcaaattatcaaa
aacgactggcatgataaaacgtatatcaatgagcgaacagaaggctttgaagcattaaaa
gcagaagtgatgctcgatagctatgcaccagataaagtggaattggtcacgggtgtgaaa
gcgcaagacgttatcaaaatagcgcagatgattggtactgctaatcgtactgccgtgtat
tactcgatgggtattacgcagcatacaacgggccatgataatgtacgttctgtggctaac
ttgcagatgttgtgcggtaacattggcatcgaaggtggtggtattaatccactacgtggt
caatctaatgtgcaaggtgcctgtgatatgggcgcactaccaaacaacttccctggttac
cagaaagtacaggtgccagaaattcatgccaaatttgccaaagcatggaataaacccaac
ttaccgaaagaggatgggttaaccctaaccgagattatcgatgctgcatgtcatgatcag
gtgaaaggtttgtatgtaatgggggaaaacccggtattgagtgatccaaaccaagcccat
gtaatagaagggttagagaagttggatttcttagtggtgcaagacattttcttaactgaa
actgcgcaatatgcggatgtcgttttaccgtcgtgttctttcgcagaaaaatcgggtcat
ttcacgaatactgaacgccgcgttcaacgtatttcacctgcggttaatcctccaggggaa
gcgaaggaagattggtggatcattcaaagtatcgcaaatgcaatggggagtgattgggcg
tatcaatcggtaaaagacattactgaagagatcacccagttaacaccacaatatgcgggt
attcactgggatcgtgtcggtagagatggccttcaatggccgtgtaacgacaacgcacct
gatggtacgcgtgttatgcacacatctcagtttacccgtggtaaaggggagatggctgca
atcccgttccgttatgcggctgagttgcctgatgcagaatatcctcttattttgacaaca
gggcgtttattagaacaattccacactggcagcatgacaagaaaaaccaaagggttggat
aacctggctggccctcgtgcaatgatttcggtcgttgatgcagagcgtcttggtgtgcgt
aatggtgaaatgcttaaagtgtcgacgcgtcgtggaagcattgaaacccctgcgtttgtt
actaagcgtatgcaagaaggtgtggtatttgtaccgttccattttgctgaagcgcctgcc
aaccgtttaacgacgacggcaacggatccccatgcgaagatccccgagttcaaagtggca
gcggttaaaattgaaaaagtacgggtgttagtagagacctgctga
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