Photobacterium profundum: PBPRB1232
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Entry
PBPRB1232 CDS
T00173
Symbol
RHLE
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBPRB1232 (RHLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppr03019
]
PBPRB1232 (RHLE)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBPRB1232 (RHLE)
Messenger RNA biogenesis [BR:
ppr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBPRB1232 (RHLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAG23104
UniProt:
Q6LHX6
LinkDB
All DBs
Position
2:complement(1381325..1382740)
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AA seq
471 aa
AA seq
DB search
MTRDDLMSFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAA
FTLPVLERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKIN
PQMMRLRQGADVLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAA
MPKQRQNLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLL
TKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEI
QVLVATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKD
LAAIERLIKQVLPREQVSGFEAVNKLPESRLDTRAIKPSKPKKPKTDHRDGQRSGENAKG
HKPQGKNKRHVGGKSQNEGTGKPSNRSGAGTGAPKAKPAKRRTPRPASVTR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacaagagatgatcttatgagctttgcctccctgggcctatctgcgccaatccttgaa
gccgtaactaaacaaggctacgaaacaccttcgccaattcaggctcaagcaattccagct
gtaatcgaaggtaaggatgtaatggcagcggcccaaacaggcacgggtaagacagcagct
ttcacacttcctgttttagagcgtttatctaatggtccacgtgttaagcctaatcaagtg
cgtgcgcttgttcttactcctacacgtgaattggcggctcaggttgcagaaagtgttgcg
ttatacgctaaaaatcttccattgagctcggctgtagtatttggtggcgttaaaattaac
ccacaaatgatgcgattgcgtcaaggtgctgatgtattagttgcaacaccgggtcgattg
cttgacctttataaccagagagctgtgcgttttgaccagatagaagtactggttctggat
gaagctgaccgcatgttagacatgggctttattcgtgatatccgtaaattattggcagca
atgccaaagcaacgccagaacttacttttttctgcaacgttctctgatgaaattcgtcag
cttgcaaaaggtttggttaataacccggtagaaatttctgttacgccacgtaatgcgacg
gctccaacagttaaacagtggatttgtcctgtagataaaagccgaaaagcgaacttatta
accaagttattgaaagaaaataactggggtcaggtactggtattcacaaagacaaaacac
ggtgcgaaccgtttgactacgcaccttgaaggtcgtggtattaaagctgctgcgattcat
ggtaacaagagtcaaggtgcacgtactaaggcattggcaaacttcaagagtaatgaaatt
caagtgcttgttgcaacagatattgctgcacgtggtcttgatattgagcaattaccacaa
gtggttaactttgaattaccgcacgttgctgaagattacgttcaccgtattggccgaact
ggccgtgctggttgtgaagggcaggcaatttcattagtgtgtgctgatgaatacaaagat
cttgctgctatcgaacgtttgattaagcaagtattaccacgtgaacaggttagtggtttt
gaagcagtgaataagctgcctgagtctcgcttagatacgcgtgcaattaagccgagtaaa
ccgaagaaaccaaagacagatcaccgcgacggacaacgttctggtgagaatgctaaaggc
cataaaccacaaggtaaaaataagcgccatgttggtggtaaaagccaaaacgaaggtacg
ggtaaaccgtcaaatcgttcaggtgctggtactggcgcacctaaagcaaaacctgcaaag
cgtcgtacccctcgtcctgcgagtgttacacgataa
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