Photobacterium profundum: PBPRC0044
Help
Entry
PBPRC0044 CDS
T00173
Name
(GenBank) putative helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03420
Nucleotide excision repair
ppr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBPRC0044
03430 Mismatch repair
PBPRC0044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRC0044
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBPRC0044
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBPRC0044
MMR (mismatch excision repair)
Other MMR factors
PBPRC0044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAG17982
UniProt:
Q6LWD2
LinkDB
All DBs
Position
pPBPR1:56032..57750
Genome browser
AA seq
572 aa
AA seq
DB search
MIDASVWEPKDGLKFDDKSLGIIKCDNNISIMAGPGAGKTEILAQKACFILETELCAWPY
NVLSISRKRESASNIKNRVSLRCGNVLSERFHSFTIEAFTKSIVDRFMHILPKHEQPNED
YKLVFNSRDSNFRDKLTFDQLTITALKIVNSSSTLMSSIRATYKYVFIDEFQDLNGHQYD
FVKSIFCGSQSVVTVVGDTKQAVMKFANALPDGFIKFKQDFKADLKIIYTNFRAAPELKQ
FIDCIGNEWWPINTESVESNIDSVALDKGDYSLLNFNDEEHEVKQLSLKIKKWISEDGIK
PKEIAILFRINTNNNYSKNLNIALLDLGVLSINESNIQDYLSEPLGKVLVSLLCLLTRPR
DIKAWECLRDSYLYCSSSNSLHNDFELTRILKLIGDTPFYGDGDAKTFDSILDVTIEIMN
EFFYENLKKTWTQYRQGTLMDETFHGVLEELKEARNISSSWSGAVDLISGVGAVRMMTIH
KSKGLEFEAVVLLGLEDYSYFRYGMTQKKLDEERSTVFVALSRAKSKLLISSAMSRKHTG
PSKFMHVNSIINDLTKFGMNRSRVDKLDTLKI
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgcttcagtgtgggaaccaaaggacggattaaaatttgacgataagtctcta
ggtatcatcaagtgtgataataacatttcaattatggctggacctggggcgggaaagact
gaaattcttgctcaaaaagcttgcttcatacttgaaacggaattatgtgcttggccttat
aatgttttatctatttcaaggaagcgagaatctgcttcaaatataaaaaacagagtatca
cttagatgtggaaatgtgctatctgaaaggtttcactcttttacaattgaagcctttacg
aaaagtatcgttgataggtttatgcatatattgcctaaacacgaacaaccgaatgaagat
tataaattggtttttaattccagagatagtaacttcagagacaagttaacttttgatcaa
cttactattaccgctttgaaaattgtaaactcttcttccaccttaatgtcatcgataaga
gcgacatacaaatatgtttttattgatgagtttcaggatttgaatggccatcaatatgat
ttcgtgaagtcaatattttgtgggtctcaaagtgttgtcactgttgtaggggatacgaag
caggcggtaatgaagtttgcaaacgctttgccagatggctttattaagttcaaacaagat
tttaaagctgacttaaagataatttataccaattttagagcagctccagaactgaaacaa
ttcatagattgtataggtaatgaatggtggccgattaatactgagagtgttgaatctaat
attgacagtgttgcattggacaaaggtgactattctctacttaatttcaatgacgaagag
catgaggttaagcaactatctctaaagattaagaaatggatttctgaggatggaattaaa
cctaaagagattgctattttatttagaataaatacaaataacaactacagtaaaaacctc
aatattgccttactagacctaggtgttttaagtataaatgaaagtaatattcaagactat
ctgtccgagcctttaggaaaagtgctagtttcattattatgcttattgactcgccctaga
gatataaaagcatgggagtgccttagagattcatatctttattgtagttctagtaactct
ctacataacgattttgagttaactagaatactcaaactaataggggatactccgttttac
ggtgatggagatgctaaaacattcgatagtatattagatgtaaccatcgaaatcatgaat
gaattcttctatgagaacttaaagaaaacttggacacaatatcgacaaggtactctaatg
gatgagacttttcatggtgtactagaagagttaaaagaagcaagaaacataagttcttcg
tggtcaggtgctgttgatcttatttcaggagttggagctgttcgaatgatgactattcat
aaaagtaaaggtttggaatttgaagctgtagtcttacttggactggaagattattcttat
ttccgatatggaatgacccaaaaaaaattggatgaggagcgttccacagtttttgtcgca
ttgtctagagccaagtcaaaactattaatatcgagtgcaatgagtcggaaacatacaggt
ccatccaagtttatgcatgttaatagtattataaatgacttaactaagttcggtatgaat
agatcacgtgttgataagttagacactttgaagatatga
DBGET
integrated database retrieval system
