Pseudomonas protegens CHA0: PFLCHA0_c10650
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Entry
PFLCHA0_c10650 CDS
T02671
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c10650 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c10650 (rhlB)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLCHA0_c10650 (rhlB)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLCHA0_c10650 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGL82857
UniProt:
A0A2C9EGS9
LinkDB
All DBs
Position
complement(1202284..1203780)
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AA seq
498 aa
AA seq
DB search
MTVLKALKKIFGKSEAEPLAPSPSAPSPSSSSRHDGRQPERSAPATAAKKEPVNTPATPS
APKAPRQEKPKAEQPKAEQPRRPRAPKPPVSTWKLEDFVVEPQEGKTRFHDFKLAPELMH
AIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQLLQTPPPKERYM
GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVAT
PGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATF
TEDVMNLAKQWTTDPAIVEIEAENVANANVEQHIYAVAGADKYKLLYNLVTDNGWERVMV
FANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH
IDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEALLGRKISC
EMPPAELLRPVERKRPQA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaaaatcttcggtaaaagcgaggctgagccgctcgcg
ccaagccccagtgccccctcccccagttccagcagccgtcatgacggccgtcagccggaa
cggagcgcacccgctaccgcagctaaaaaagaaccggtgaacacaccggccaccccttcc
gctcccaaagccccacgccaagagaagcccaaggccgagcaacccaaagctgagcagccg
cgtcgcccgcgcgcgccgaaaccgccggtcagcacctggaaactcgaagacttcgtggtc
gaaccccaggaaggcaagacccgcttccacgacttcaagctcgctccggaactgatgcac
gccatccaggacctgggctttccctattgcacgccaatccaggcccaggtgctgggctat
accctggcgggcaaggacgccatcggccgggcccagaccggtaccggcaagaccgccgca
ttcctggtgtcgatcatcacccagctgctgcagaccccgccgcccaaggagcgctacatg
ggcgaaccacgggcgctgatcatcgctccgacccgggagctggtggtacagatcgccaag
gacgccgcggcgctgaccaagtacaccggcctcaacgtcatgaccttcgttggcggcatg
gatttcgacaagcagctcaagcacctggaagcgcgccactgcgacatcctggtcgccacc
ccgggccgcctgctggacttcaatcagcgcggcgacgtgcacctggacatggtcgaagtg
atggtgctggacgaagccgaccgcatgctcgacatgggcttcatcccgcaggtacggcag
atcattcgccagacgccccccaagagcgagcgccagaccctgctgttctccgccaccttc
accgaagacgtgatgaacctggccaagcaatggaccaccgacccggccatcgtcgagatc
gaagccgagaacgtcgccaacgccaacgtcgaacagcacatctatgccgtggccggcgcc
gacaagtacaaactgctgtacaacctggtcaccgacaacggctgggaacgggtgatggtc
ttcgccaaccgcaaggatgaagtgcgacgcatcgaggaacgcctggtacgcgatggggtg
aacgccgcccagctgtccggcgacgtgccgcagcacaagcggatcaagaccctggaaggc
ttccgcgaaggcaagatccgggtcctggtagccaccgacgtggccggccgcggcatccac
atcgacggcatcagccacgtgatcaacttcaccctgccggaagtgccggacgactacgtg
caccgcatcggccggaccggtcgcgccggtgccgacggcgtatccatcagcttcgccggc
gaagacgactcctaccagctgccatcgatcgaagccctgctgggccgcaagatcagctgc
gagatgccgcccgccgaactgctgcgcccggtggagcgcaagcgcccgcaagcctga
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