Pseudomonas protegens CHA0: PFLCHA0_c13420
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Entry
PFLCHA0_c13420 CDS
T02671
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pprc
Pseudomonas protegens CHA0
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprc03021
]
PFLCHA0_c13420 (rapA)
Transcription machinery [BR:
pprc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PFLCHA0_c13420 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGL83132
UniProt:
A0A2C9EHK6
LinkDB
All DBs
Position
complement(1497247..1500096)
Genome browser
AA seq
949 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DSITHFEGWKMTVQEVDDVDGLLVYHGLNGQNEAVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
SNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPEYALVEQL
AETIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELMDK
GRLSPEAHKTIHGFLGNEGEALLAAVNDGDSEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHAYPLPCPDEYLELPLGEHAELYPEVSFQAQPDVSDDEQRWWKFDPRVEWLID
QLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFG
AQVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETS
PQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGEWQALIDEARGERERL
EAELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENA
LILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMG
NTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSARVA
FETLNDQLESVPKASANKFIQAQRDQLAPKINAGEAKVAPRHAERVAEAQRRLAADTDEE
LARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagccgagctgggt
ttaggcaccgttctggcacaggacggtcgcttgctgaccgtgctctatccggccactggc
gacacccgccagtatgcgctacggaatgcgcccctcactcgcgtgaggttctctccgggt
gacagcatcacccacttcgaaggctggaaaatgaccgtacaggaagtcgatgatgtcgac
ggcctgctggtctaccacggcctcaacgggcagaacgaagccgtcaccctaccggaaacc
caactctcgaacttcatccagttccgtctggccagcgaccgtctgttcgccgggcagatc
gacccgctggcctggttctccctgcgctaccacaccctggaacacaccagccgccagctg
cagtcctcgctctggggcctgggtggcgtgcgcgcccaacccatcgcccaccagttgcac
attgcccgtgaagtcgccgaccgcatcgcgccgcgggtcctgctggcggacgaagtgggc
ctgggcaagaccatcgaggccggcctggtgatccatcgccaactgctctcgggtcgcgcc
agccgggtgctgatcctggtaccggaaaacctccagcaccagtggctggtagagatgcgc
cggcgcttcaacctgcaagtggcactgttcgatgaagaacgctttatcgagagcgatgcc
agcaacccgttcgaagacacccagctggccctggtggccctggagtggctggtggacgac
gagaaggcccaggacgcgctgttcgccgccggctgggacctgatggtggtggacgaagcc
caccacctggtgtggcacgaagaccaggtcagcccggaatacgccctggtggaacagctg
gcagagaccattcccggcgtgctgctgttgaccgcaaccccggaacaactgggccaggac
agccacttcgcccgcctgcgcctgctggacccgaaccgtttccacgacctcgcggccttc
cgcgccgagagcgagaactaccgcccggtggccgaagccgtgcaggaactgatggataaa
ggccgcctgtctcccgaggcgcacaagaccatccacggtttcctcggcaacgaaggcgaa
gccctgctggccgcggtcaacgacggcgacagcgaagccagcgcacgcctggtgcgtgaa
ctgctggaccgccacggcaccggccgcgtgctgtttcgcaacacccgcgccgcggtgcag
ggtttccccgagcgcaagctgcacgcctacccgctgccatgcccggacgaatacctggaa
ctgcccctgggcgaacacgccgagctgtacccggaagtcagcttccaggcccagcccgac
gtcagcgatgacgaacagcgctggtggaagttcgacccgcgggtcgagtggctgatcgac
cagctgaaaatgctcaagcgcaccaaggtgctggtgatctgcgcccacgcggaaaccgcc
atggacctggaggacgccctgcgcgtgcgctccggcatcccggccacggtattccacgag
ggcatgaacatcctcgaacgtgaccgtgccgccgcctacttcgccgatgaagagttcggc
gcccaggtgctgatctgctcggaaatcggcagtgaaggccgcaacttccagttcgcccac
catctggtgctgttcgacctgccgtcgcacccggacctgctggagcagcgtatcggccgt
ctcgaccggatcggccagaagcacgtgatcgaactgcacgtgccgtacctggaaaccagc
ccgcaagagcgcctgttccagtggtaccacgaagccctgaacgccttcctcaacacctgc
ccgaccggcaacgccctgcagcatcagttcggcccgcgcctgctgccgctgctggagaat
gccgatgacggcgagtggcaagcgctgatcgacgaagcccgtggcgagcgtgaacgcctg
gaagccgagctgcacaccggtcgcgaccgcttgctggagttgaactccggtggtgccggc
gaaggcgacgccctggtggaagcgatcctcgaacaggacgaccagttcgccctgccgatc
tacatggaaaccctgttcgacgctttcggcatcgacagcgaggaccattcggaaaacgcc
ctgatcctcaagcccagcgagaagatgctcgacgccagcttccccctgggcgacgacgaa
ggcgtgaccatcacctacgaccgcaaccaggcgctgtctcgcgaggacatgcagttcatc
acctgggaacaccccatggtgcagggcggcatggacctggtgctgtccggctccatgggc
aacaccgccgtggcgctgatcaagaacaaggcgctcaaacccggcaccgtgctgctggag
ctgctgtacgtcagtgaagtggtcgccccgcgctcactgcaactgggccgctacctgccg
ccggctgccctgcgctgcctgctggacgccaatggcaacgacctgtcggcgcgggtcgcc
ttcgagaccctgaacgaccagctggaaagcgtgcctaaggccagcgccaacaagttcatc
caggcccagcgcgatcaattggcgccgaagatcaacgccggcgaagccaaggtcgcaccg
cgtcacgccgaacgtgtggccgaggcgcaacgccgcctggcagccgacaccgacgaagaa
ctggcgcgcctgaccgcgctgcaggcggtcaacccgactgtccgtgacagcgagctggtg
gccctgcgtcaacagcgcgaacagggcctggccatgctggaaaaagccgccctgcgcctg
gaagcgatccgggtgctggtggcgggctga
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