Pseudomonas protegens CHA0: PFLCHA0_c15340
Help
Entry
PFLCHA0_c15340 CDS
T02671
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pprc
Pseudomonas protegens CHA0
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprc03016
]
PFLCHA0_c15340 (rnd)
Enzymes [BR:
pprc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PFLCHA0_c15340 (rnd)
Transfer RNA biogenesis [BR:
pprc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFLCHA0_c15340 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AGL83322
UniProt:
A0A2C9EI43
LinkDB
All DBs
Position
1709542..1710576
Genome browser
AA seq
344 aa
AA seq
DB search
MRVDTFYPIAALLQIGDGQRAYLIDPLTIDNWQPLAALLENPAVVKVVHACSEDLEVLLR
LTGSLPAPLFDTQLAAAYLNLGFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSY
AAEDAVHLAQVFTELRPRLSEDKYRWVLEDGAELVANLRREVDPYEVYREAKLAWKLSRA
QLAVLRELCAWREREARARNLPRNRIVREHALWPLAKTQPDNLSALAKIEDMHPRTVRQD
GEFLLDLIKRTASVGPDQWPPAVPEPLPIEAAALLKRLKAVGQAQAERLGIAPEVMLRKK
TLESLLKSGFPNGPYQLPDSLRGWRRELMGQALLDSLATAGEQP
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcgacactttctatcccattgccgccctgttgcagattggcgatgggcagcgc
gcctacctgattgaccctttgaccatcgacaactggcagccactggcggccctgctggag
aatccggcagtggtcaaggtggtgcacgcctgcagcgaggaccttgaagtcctgctgcgc
ctgactggcagcctgccggcgccgttgttcgacacgcaactggcggccgcctacctgaac
ctgggtttctccatgggctattcgcgcctggtgcaggaagtcctgggcatcgacctgccc
aagggcgagacccgttccgactggctgcagcgcccgctgtcggaaacccaggtcagctac
gccgccgaagacgccgtgcacctggcccaggtgttcaccgaactgcggcccaggttgtcc
gaggacaagtaccgctgggtgctggaagacggcgccgagctggtggccaacctgcgccgc
gaagtggacccctacgaggtctaccgcgaagccaagctggcctggaaactgtcccgcgcc
cagctggcggtcttgcgtgaactgtgtgcctggcgcgagcgcgaggcccgtgcccgcaac
ctgccgcgcaaccgtatcgtgcgcgagcatgccctgtggcccttggccaagacccagccg
gacaacctgtcggcgctggccaagatcgaagacatgcacccgcgtaccgtgcgccaggac
ggcgagttcctcctcgacctgatcaagcgcaccgccagcgtcggcccggatcaatggccg
ccggccgtgcccgaacccctgccgatcgaagccgcggccctgctcaagcgcctcaaggcc
gtgggccaggcccaggccgagcgcctggggatcgccccggaagtgatgctgcgcaagaaa
accctggagagcctgctcaagagcggcttccccaacgggccttaccaattgcctgattcg
ttgcgtggctggcgccgcgaattgatgggccaggcgctgctggacagcctggccaccgcc
ggagaacagccttga
DBGET
integrated database retrieval system
