Pseudomonas protegens CHA0: PFLCHA0_c15700
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Entry
PFLCHA0_c15700 CDS
T02671
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pprc
Pseudomonas protegens CHA0
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c15700 (hrpA)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFLCHA0_c15700 (hrpA)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PFLCHA0_c15700 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AGL83358
UniProt:
A0A2C9EIE7
LinkDB
All DBs
Position
1744909..1748820
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPAIDQLLKNLDQAMLGDRHRLRRQLLELRKKPDEAKLAQWLERMQASCNLVTARR
QSVPQIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGSLVGYQVRFEDQSDSSTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDNAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDLQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSANTQLLEQLDAL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVHSQKNPQLLIMREEDVLARE
ASEVTAKQYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMVFAEGSLPQALGRELLRMTGARVSDEA
WSEAEQQVESHLRMNLEIVDAQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVQ
AKVFAAVAEKTQQKIAGLSMTVYPALVEEAGTVKEGRFSTAAEAEFQHRRALQRLLLQQL
AEPAKFLRGKLPGLTELGLLYRELGRVDALVEDILLASLDSCILEGEAVLPRDGAGLASL
AERKRGAWTEHAERLARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKAQLANLVYPGF
VRETPALWLKELPRYLKAVELRFEKLGSQVQKDRVWSSELSGLWSQYQTRAQKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVDA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgcctgcaatcgaccaactgctgaaaaacctcgatcaagccatgctc
ggcgaccgtcaccggttgcgccggcagttgctcgaactgcgcaagaagcccgacgaggcc
aagctcgcccagtggctggagcgcatgcaggcttcctgcaacctggtgacggcgcggcgc
cagagcgtgccgcagatccgctatgacgacagcctgccgattgccgccaagcgcgacgag
atcaaggaggcgctgctcaagcatcaggtgctgatcattgccggcgagaccggctcgggc
aagaccacccagttgccgaaaatctgcctggaaatcggtcgtggccagcatggcctgatc
ggccatacccagccccggcggattgccgcccgcagcgtggccagccgggtcgccgaagag
ctggccacgcccctgggctcgctggtgggctaccaggtgcgcttcgaggaccagagcgat
tccagcaccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgat
cgctacctggaacgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaac
atcgacttcctcctcggctacctcaagaccctgctgccgcggcgcccggacctgaaggtc
atcatcacctcggcgaccatcgaccttgagcgcttctccaagcacttcgataacgcgccg
atcgtcgaggtctccggccgcaccttcccggtggaaacctggtatcgcccgttgaccctg
gaacaggacgaggagggcaaccgggtcgaggacgacctcacggtggaccaggcgatcctc
gccaccctggatgaaatcgccgcccatgaacgcagtgaaaggcgcagccccggggatgtg
ctggtgttcctgcccggcgagcgggagatccgcgacgccgcggagatgctgcgcaaggcc
cagctcaagcacaccgagatcctgccgctgtacgcgcgcctgtcgccggccgaacagcag
cgcatcttccagtcccacccgggccgccgcgtggtgctggccaccaacgtcgccgaaacc
tcgctgaccgtgccgggcatccgctacgtgatcgacagcggcactgcgcgcatcagccgc
tacagctaccgggccaaggtccagcgcctgcccatcgaggcgatttcccaggccagcgcc
aaccagcgcaagggccgttgcggccgggtcgaaccggggatctgcgtacgcctgtacagc
gaggaagatttcctcggccggccggaattcaccgacccggagatcctgcgtaccaacctg
gcggcggtgatcctgcagatgctgcacctgcgcctgggggaaatcactgccttcccgttt
atcgagccgccggatggcaaggccatcagcgacggtttcaacctgctgcaggaactctcg
gcagtcgaccgcaacagccagctgacaccactgggccggcaactggcgcgcctgccggtg
gatccgcgcatgggccgcatgctgctggaagcggccaagctcggcagcctccaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccccgcgagcgtccgccggagcgccag
caggccgccgaccaggcccacgcccagtggaaggacgtggattcggacttcgccgggctg
gtcaacctgtggcgcggcttcgaagaacagcgccaggccctcaccgccagcccgctgcgc
aactggtgccgcaagaatttcctgaactacctgcgcctgcgcgagtggcgtgattcgcac
cggcagttgagcctgatctgccgcgacctgcaactgagcctgaacaaggagccggcggac
tacccgaaactgcacaaggcggtgctggtaggcctgctcagccagatcggccagaagacc
gaagacggcgactacctgggggcccgccagcggcgcttctggatccacccgtcctcgggc
ctgggcaagaagcgcccgcaatggctgatgaccgccgagctggtggaaaccaccaagctc
tatgcgcgcatggtggccaagatcgagccggactggatcgagcccctggccggccatctg
gtgaagaagaaccacttcgagccccattgggagaagaagcgcggccaggtagtggcctac
gagcagatcaccctgttcggcctgatcgtggtcggccgccggccagtgcattacggcccg
gtggacccggtggtgtcccgcgagctgttcatccgcgaggccctggtgcgtggcgaaatc
cagtccaaggccaagtgcctgagcgccaacacccagttgctggaacagctcgatgccctg
gaagccaaggcccggcgccgcgacatcctggccgacgaggaaaccctgttcgccttctac
gacgcacgtttgccggcggagatccaccagaccgcgaccttcgacagctggtaccgggtg
cacagccagaagaacccgcagttgttgatcatgcgcgaggaagacgtgctcgcccgcgag
gccagcgaggtcaccgccaagcagtacccggacaccctgcatatcggtgacctggaactg
gccctgagttaccacttcgaacccaaccatccccgggacggcgtgaccctgcgggtgcca
gcgccgctgctgccggcactgcccgccgaacgcctggaatggctggtgccggggctgatc
gaggccaagtgcatcgccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggccgccctgcagcgcatggtcttcgccgagggctccttg
ccccaggccctgggccgcgagctgctgcgcatgaccggtgcccgggtcagcgacgaggcc
tggagcgaagccgaacaacaggtggaaagccacctgcggatgaacctggaaatcgtcgac
gcccagggcaagttcctcggcgaaggccgcgacctggccgaactgaccgcgcgtttcgcc
gaagccagccaggctgccctggcggtgccgcagactgccaagagccagcaaccggtgcaa
gccaaggtatttgccgcggtggcggaaaagacccagcagaagatcgccgggctgtcgatg
acggtgtacccggccctggtggaggaggcgggtacggtcaaggaagggcgcttctccacc
gctgccgaagccgagttccagcatcgccgggccttgcagcgcctgctgttgcagcaactg
gccgagccggccaagttcctgcggggcaagttgccgggccttaccgagctgggcctgctg
taccgcgaactgggccgggtcgatgcgctggtggaggacattctcctggccagcctcgac
agttgcattcttgaaggcgaggccgtgctgcctcgggatggcgcgggcctggcctccctg
gccgagcgcaagcgtggtgcctggaccgagcacgccgagcgcctggcacgcctgaccctg
gagatcctcaagctctggcacggcctgcaaaagcgcttcaagggcaagatcgacctggcc
caggccgtggccctcaacgacatcaaggcccagctggcgaacctggtgtacccgggcttt
gtccgggaaaccccggccctgtggctcaaggaactgccgcgttacctcaaggccgtggaa
ctgcgcttcgagaaactcggcagccaggtgcagaaggaccgggtctggagcagcgagctc
tcgggcctgtggagccagtaccagacccgggcccagaagcatgcccaggaaggcaagcgc
gacccgcagctggagctgtaccgctggtggctggaggagtaccgggtgtccctgttcgcc
cagcagttggggaccaaggtgccgatttccgacaagcgcctgagcaagcagtggagcctg
gtcgacgcctga
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