Pseudomonas protegens CHA0: PFLCHA0_c18240
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Entry
PFLCHA0_c18240 CDS
T02671
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c18240 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c18240 (rne)
03009 Ribosome biogenesis [BR:
pprc03009
]
PFLCHA0_c18240 (rne)
Enzymes [BR:
pprc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PFLCHA0_c18240 (rne)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFLCHA0_c18240 (rne)
Ribosome biogenesis [BR:
pprc03009
]
Prokaryotic type
rRNA processing factors
PFLCHA0_c18240 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AGL83606
UniProt:
A0A2C9EIW8
LinkDB
All DBs
Position
complement(2009478..2012696)
Genome browser
AA seq
1072 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEANTNQSSYEIAAAAAEAEEVQPTAATRTLVRQEAAVKTAPARANAPVPT
EVVAAPVAAPAPVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPVTERPARSNEEQRRN
GRQQSRNRNGRRDEERKPREERAPREERAPREERQPREVREAREEVQAVAREERAPRAPR
EERQPRAPREERKPRGEREERVRELREPLDAAPAAAAATAAVVAEERPARQPREERQPRA
PREERQPRAEQAQAAAASEEEALPNEEQLQEDGQDNAEGERPRRRSRGQRRRSNRRERQR
DANGNVIEGSEENAEEPSSADLAAGLAVTAAVASTAISANAEAEAHQQAERATAAVEDKA
PEAPVVEATTPVEAPVVPAVEVAPVAEEQAQVEVAAEPAVVVEAQPVVAEQPAAEPVAQA
PVVEEKAIEPVQEAPAPAPVAEPAVVVEEPVAAQQPAQVEEPAPVAAPVVAEEPAPAVEA
EAAPVSTLTSNGRAPNDPREVRRRKREAERLQKEAELAAAAAPAEAVVTAEPAPVEAPEV
VEAPPAPAEETAPAPVAEPAVEEAAPVAEQAPRAVEHAVHAEEEQHEPKPLV
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgctctggtagac
ggccagcgcctctacgacctggacatcgagtccggagcccgcgagcagaaaaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctc
gccggccgttacctggtactgatgccgaacaacccgcgtgccggcggtatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggtggcacccgcc
gacatgggcctgatcgtgcgcactgccggcctgggccgcagcagcgaagagatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaggaagcgtccctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagtgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtggtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcagcggaagaaatcgctcgccaactgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgtgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccgcgctgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtgcgcgcccaagtg
ccgattccggtcgccgctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcatcctgccgaacgatcacctcgaaacgccacacttc
gaagttcagcgcctgcgtgatgacagcccggaagccaacaccaaccagtccagctacgaa
atcgcagcggccgccgccgaagccgaagaagtccagccaaccgccgccacccgcaccctg
gttcgccaggaagcggcagtgaagactgccccggcccgcgccaacgctccggttccgacc
gaagtcgtcgctgcccctgtagctgcaccggctccagtggccgaaccaagcctgttcaaa
ggcctggtgaagtccctggtcagcctgttcgctaccaaggaagagccagccgcaccggtc
gtggtcgagaagccagtgaccgagcgccctgctcgcagcaacgaagaacagcgtcgcaat
ggccgccagcagagccgcaaccgtaacggtcgccgcgatgaagagcgcaagccgcgcgaa
gaacgtgctccgcgtgaagaacgcgcaccacgggaagagcgtcagccacgcgaagttcgc
gaagcccgtgaagaagttcaagcggtagcccgcgaagaacgcgcaccccgtgcaccgcgc
gaagaacgccagccacgcgccccgcgtgaagagcgcaagccacgtggcgagcgtgaagaa
cgtgtgcgtgaactgcgcgagcctctggacgccgctccagctgcagccgctgctaccgcc
gccgttgttgccgaagaacgtccggcgcgccagcctcgcgaagagcgccagccacgtgcg
ccacgtgaagagcgccaaccacgtgccgaacaggctcaagccgctgccgccagcgaagaa
gaagcgctgccgaacgaagagcaactgcaggaagacggccaggacaacgccgaaggcgaa
cgcccacgtcgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcaacgt
gatgccaacggcaatgtgatcgaaggctcggaagaaaacgccgaagagccaagcagcgcc
gatctggctgccggccttgcggtaactgccgcggttgccagcaccgccatcagcgccaac
gctgaagccgaagctcaccagcaagccgaacgtgcgactgccgctgtagaagacaaggct
ccggaagccccagtggttgaagccaccacgccggtagaagccccagtggttcctgcagtg
gaagtggctccagtggctgaagagcaggctcaggttgaagtggctgccgaaccggccgtg
gttgtcgaagcccagcctgtggttgccgaacaaccggcagcagaacctgtagcccaggcg
ccagtggttgaagaaaaggccatcgagccggttcaggaagcccctgcgccagccccagtt
gccgagccagcagtggtggttgaagagcctgtagcggcccagcagcctgcccaggttgaa
gagccggctccggttgcagcaccggtggtggccgaagagcctgcacccgctgtcgaagct
gaagccgcgccggtcagcaccctgaccagcaatggccgtgcaccgaacgacccacgcgaa
gtgcgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagccgagctggctgccgct
gctgctccggctgaagccgtggtgaccgccgagccggctccggtagaagcgccggaggtg
gtcgaggccccccctgcgccagccgaagagactgcaccggcgccagtggccgaacctgca
gtggaagaagcggcccctgtggccgagcaagcaccgcgcgctgtcgagcacgctgtgcat
gccgaggaagaacagcacgagcctaaacctctcgtctga
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