Pseudomonas protegens CHA0: PFLCHA0_c18380
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Entry
PFLCHA0_c18380 CDS
T02671
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03030
DNA replication
pprc03430
Mismatch repair
pprc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFLCHA0_c18380 (holB)
03430 Mismatch repair
PFLCHA0_c18380 (holB)
03440 Homologous recombination
PFLCHA0_c18380 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprc03032
]
PFLCHA0_c18380 (holB)
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c18380 (holB)
Enzymes [BR:
pprc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFLCHA0_c18380 (holB)
DNA replication proteins [BR:
pprc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFLCHA0_c18380 (holB)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFLCHA0_c18380 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_16
nSTAND3
AAA_5
iSTAND
HolB_lid
Mg_chelatase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGL83620
UniProt:
A0A2C9EIY6
LinkDB
All DBs
Position
2024571..2025764
Genome browser
AA seq
397 aa
AA seq
DB search
MSAWREPVLVAGWIASSRKARPSSRGFAKPSWPAPQRRRSVMCWWMRRSPWPRSSSPWTA
CCRSCWSAPVAEVFPWQDSLWQQLAGRTQHAHAYLLHGPAGIGKRALAERLMARLLCQRP
EGLDACGQCKSCLLLLAGSHPDNYVLEPEEADKAIKVDQVRELVSFVVQTAQLGGRKVVL
IEPVESMNINAANALLKSLEEPSGNTVLLLVSHQPSRLLPTIKSRCVQQACPLPSEAMSL
EWLAQALPDCSEEERVELLTLAAGSPLAAVSLQAQGVREQRAQVVEGVKKLLKQQQSPTQ
LAESWSAIPLLLLFDWFCDWSNLVLRYQLTQDEQGLGLQDMRKVLQYLAQKSAQAKVLNI
QDWILAQRQKVLSKANLNRVLLLEALLVQWAALPTQN
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctggcgcgagccagtgctcgtggccggctggatcgcttcgagcaggaaggcc
aggccttcttccagagggttcgcgaagccttcctggcccgcgccgcagcggcgccgcagc
gttatgtgctggtggatgcggcgcagcccctggcccaggtccagcagtccctggacagct
tgttgccgcagttgctggagcgcgcccgtggctgaagtcttcccctggcaggacagcctc
tggcagcaattggcggggcgtactcagcatgcccatgcctacctgttgcatggcccagcg
ggtatcggcaagcgggccctggccgagcggctgatggcgcgcttgctgtgccagcgcccg
gaaggcctggacgcctgtggtcaatgcaagtcctgcctgttgctgctggccggcagccac
ccggacaactacgtgctggagccggaggaagcggacaaggcgatcaaggtcgaccaggtc
cgcgaactggtgagcttcgtggtccagaccgcccagttgggggggcgcaaggtggtgctg
atcgagccggtggagtcgatgaatatcaacgccgccaacgccctgctcaagagtctcgag
gagccttccggcaacactgtgctgttgctggtaagccaccagcccagccggttgttgccc
acgatcaagagccgttgcgtgcagcaggcctgcccgctgcccagcgaggccatgagcctt
gagtggctggcccaggccctgcctgattgctccgaggaggagcgggtggagctcttgacc
ctggctgccggttcgccgctggcagcggtcagcctgcaggcccagggtgttcgcgagcag
cgggcgcaggtggtggaaggggtgaagaagctgctgaaacagcaacagtcgcccacgcaa
ctggccgaatcctggagtgccattcccttgttgctgctgttcgactggttctgcgactgg
tcgaacctggtcctgcgctatcaactgacccaggatgagcagggactgggcctgcaagac
atgcgcaaggtgctgcaatacctggcgcagaagtccgcccaggccaaggtgctgaacatc
caggactggatcctggcccagcgccagaaggtcctgagcaaggccaacctcaaccgcgtg
ctgttgctggaagccttgctggtgcagtgggcggccctgcctacccagaattga
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