Pseudomonas protegens CHA0: PFLCHA0_c19970
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Entry
PFLCHA0_c19970 CDS
T02671
Symbol
topA
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pprc
Pseudomonas protegens CHA0
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprc03032
]
PFLCHA0_c19970 (topA)
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c19970 (topA)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFLCHA0_c19970 (topA)
DNA replication proteins [BR:
pprc03032
]
Prokaryotic type
DNA Topoisomerases
PFLCHA0_c19970 (topA)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFLCHA0_c19970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGL83778
UniProt:
A0A2C9EJN4
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All DBs
Position
2216294..2218906
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGSN
VRFEVARENGEAFKPLNEAQAMAALEKLKASAYSVAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGNKYLPASPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQMAKPGDDDVLPEMAQGEVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGAESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLCEAPQKDPDGRPAVVRYSRKTK
EQYVQTEVDGKPTGWRAFYDGGKWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcaagtgccgccaaggagccagccgccaagcgtggcaaggccgctgcgggcgaa
gccccggctctgtcgccgaaggaaaaggctcgcaagcagctggtgtcgcgcatgggcgtc
gatcccgagcacggctggaaagccaagtacgaaatcctccctggcaaggaaaaggtcatc
gaagagctgcgccgccttgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaggccattgcctggcacctgcgggaagccattggcggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctcccag
ccgggcgagctggacattgatcgagtcaatgcccagcaggcgcgacgcttcctcgaccgc
gtggtgggctacatggtttcgccgctgctgtgggcgaagatcgcccgtggcctgtctgcc
ggtcgcgtgcagtcggtagccgtgaagctggtggtggagcgcgagcgtgagattcgtgcc
ttcatcccggaagaatactgggaagtacacgctgacctgggcactgccaagggctcgaat
gtgcgttttgaagtagcccgtgaaaacggtgaagccttcaagccgctcaacgaagcacag
gccatggccgccctggagaagctcaaggcctcggcctacagcgtcgccaagcgtgaagac
aagcccaccagcagcaagccatcggcgccgttcatcacctccaccctgcagcaggctgcg
agcaatcgcctgggcttcggcgtgaagaagaccatgatgatggcccagcgtctgtatgaa
gccggctacatcacctatatgcgtaccgactccaccaacctctcggccgatgccgtggcg
atggcgcgtacctatatcgaagacgagttcggcaacaagtacctgccggcttcgcccaat
gtctacagcagcaaggaaggggcccaggaggcgcacgaagcgattcgtccgtccgatgtg
aacacccacccaagcaagctgtcgggcatggaacgtgacgctgagcgcctctacgagctg
atctggcgccagttcgtcgcctgccagatgctgccggcgcaatacctgtccaccaccgtc
agcgtcgccgctggcgacttcgagctgcgtgccaagggccgcatcctcaagtttgacggt
tacacccgggtcatgccgcagatggccaagccgggcgatgacgatgtgctgccggaaatg
gcccagggcgaagtgctgaagctgatcaagctcgatccgagccagcacttcaccaagcca
ccggcgcgttactccgaagccagcctggtgaaggaaatggaaaagcgcggcattggtcgt
ccttcgacctatgcggcaatcatttcgaccatccaggatcgcggctatgtgaccctgcac
aaccgtcgtttttattcggaaaagatgggcgacatcgtcactgagcgcctttccgagagc
ttctccaatctcatggactacggcttcaccgccggcatggaagagaatctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtcctcgacgaattctacggtgacttcaagaag
aagctcgaagtggccgagggcgccgaaagcggcatgcgcgccaaccaaccggtaatgacc
gatatcccatgccagacctgcggccggccgatgcagatccgtaccgcctccaccggcgtg
ttcctcggctgctcgggctacagcctgccgcccaaggagcgttgcaaggccaccgtcaac
ctggtgccgggcgacgagatcgccgcggatgacgagggcgagtccgaatccctggtgctg
cgcggcaagcatcgttgcccgatctgcagtacggcgatggatgcctacctgctggacgaa
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccggatcaaggggtatgaaggcccgagcctggagtgtgataagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacactcgcaagctgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcccgagctcaagtgcgagaaggtcaacgacacctacatcctgcgcgatggcgct
tcgggcctgttcctggcggccagtcagttcccgaaaaaccgcgagacccgtgcgccgttg
gtgctggaactgatcccgcacaaggatgagatcgatcccaagtaccacttcctctgcgaa
gctccgcagaaggacccggacggccgccctgcggtggtgcgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgtgccttctacgac
ggcggtaaatggaaggtcgaagacaagcgctaa
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