Pseudomonas protegens CHA0: PFLCHA0_c23560
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Entry
PFLCHA0_c23560 CDS
T02671
Symbol
fecI4
Name
(GenBank) putative RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFLCHA0_c23560 (fecI4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprc03021
]
PFLCHA0_c23560 (fecI4)
Transcription machinery [BR:
pprc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLCHA0_c23560 (fecI4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
GerE
HTH_3
HTH_11
HTH_24
HTH_Tnp_4
PhyR_sigma-like
Sigma70_ECF
HTH_31
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AGL84127
UniProt:
A0A2C9EKD7
LinkDB
All DBs
Position
2598024..2598545
Genome browser
AA seq
173 aa
AA seq
DB search
MPADDLSLRCAVTDLYTHHHGWLQGWLRQRLGNAFDAADLAQDTFVRVLKARNAVEIREP
RPYLSRIARGLLIDLFRRRSLEQAYLEALALVPEGEHPSPEEQSVLFQALMEIDRLLDGL
GPKVKQAFLLSQCDGLTYEQIAERLQISVRSVSNYMAKAMEHCCLMQMRMQLS
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgacgacttatccctgcgctgtgccgtcaccgacctctacacccatcaccat
ggctggctgcagggctggttgcgccagcgcctgggcaacgccttcgatgccgccgacctg
gcccaggacaccttcgtgcgggtgctcaaggcgcgcaacgcagtggagatccgtgagccg
cggccctacctgtcgcgcattgcccggggcctgctgatcgatctgtttcgccgacgttcc
ctggagcaggcctacctcgaagccctggccctggtacccgagggcgagcacccgtcgccg
gaggagcagagcgtgctgttccaggcgctgatggaaatcgaccggctgctggatggcctg
gggcccaaggtgaaacaggctttccttctgtcccagtgcgacggcctgacctacgaacag
atcgccgagcgcctgcagatttccgtgcgcagcgtgagcaactacatggccaaggccatg
gagcattgctgcctgatgcagatgcggatgcagctgtcatga
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