Pseudomonas protegens CHA0: PFLCHA0_c27900
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Entry
PFLCHA0_c27900 CDS
T02671
Symbol
sbcC
Name
(GenBank) nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pprc
Pseudomonas protegens CHA0
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c27900 (sbcC)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFLCHA0_c27900 (sbcC)
Archaeal homologous recombinant proteins
PFLCHA0_c27900 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_21
AAA_29
SMC_N
ABC_tran
cobW
RsgA_GTPase
AAA_22
MMR_HSR1
nSTAND3
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGL84561
UniProt:
A0A2C9ELQ1
LinkDB
All DBs
Position
complement(3056991..3060635)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNIGRETKVPEVDSEILTSDPRTLLRRGTGSGYAEVDFVGIDGRRYRARWETNRARDKA
TGKLQGSRQNLTDLDSEQLLSNQSKSEYKQLIEARLGLNFEQFTRAVMLAQSEFSAFLKA
DDKERSELLEKLTNTAVYSQLGRRAYSKSKEAEDAHKELKAQASGISPLEPEARAELEQQ
LSQAQQQLKEQQAQLRQLEAQHVWLKELRQWQEARQSAAEQLQAAEQDAQALAPERLRLQ
RLEQLAPQRHQFLRQAELGASLLPLRQQIQQQVEQQGALQQQQERLQQQLQDAGTALSQA
QEQHSTSAPLLREAFAEQANLERLGQSLAQAEAQRSRAEQASTEGQQGIQQLLEKQRLVG
ERLERIAGQLAHSVALAPLSDAWNAYRERLQQLMLIGNRLHQGQAELPALEQRASSAAQQ
LSEQRTQLELLYSEAGAEPQAVAEQIQLLGTLLQDNRKQQRAVEELARLWAQQRELDQRG
QALQDRQQAVAAQREELNKVGLQAKAELVVAEQTLSVTQALLERQRLARSASVEELRGQL
QSDQPCPVCGSVEHPYHQPEALLQSLGRHDENEEASARKTVDSLKEQLNELRAQVQGLIA
QQKEFLQQQEQLASQQQALAPSLQAHPLSASLLDQDPPKRDAWLQQQLDQLQQSITQDEN
RQGALLTLQKDAARLQNQLQAAIDASQQAAQHLDKQQQQLNADRQRLDEELASFSHLLPA
EVLDGLRRDPASTFMQLDQQVLQRIEQLREQQEEAEEQQQRQLTLEKEQDRQLTRQQQLA
EAQQQFDTLHQQQQACQHRLAELLGQQPSAEHWQQHLEQAVDQARSAQALAQQQQQALHQ
QAIELGAELKAREERLQALESEQQQLAASIEQWRAGHPELDDAGLQQLLELDEEQVQQLR
QRLQDNDKAIEQAKVLLQERQQRLEQHQAQHNGNLETEQLAQALEQLQQQAQASEQQVAD
LRARQSEDQRRQAANQALNQRLEQAYAQWQRWARLSALIGSAEGDKFRKIAQAYNLDLLV
HHANAQLRQLVRRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLAS
MASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIK
VSRQGNGLSTLEVK
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctggccatccgcctgaagaacctggcctccctggccggccccttcgagatc
gacttcaccgccgagcccctggccagcgccgggctgttcgccattaccgggcccaccggc
gccggcaagagcaccctgctggatgccctgtgcctggcgctgttcggcgcggtgccgcgg
ctgaacaacatcggccgcgagaccaaggtccccgaggtcgacagcgagatcctcaccagc
gacccgcgcaccctgctgcgccgcggcaccggcagcggctatgccgaggtggattttgtc
ggcatcgacggccgtcgctaccgcgcccgctgggaaaccaaccgcgcccgcgacaaagcc
accggcaagctgcaaggcagccggcagaacctcaccgaccttgacagcgaacagctgctg
agcaaccagagcaagagcgaatacaagcaactgatcgaggcccgcctggggctcaacttc
gaacagttcacccgggcggtgatgctggcccagagcgagttcagcgcctttctcaaggcc
gacgacaaggaacgcagcgagctgctggaaaagctcaccaacactgcggtctacagccag
ttggggcgccgcgcctacagcaagagcaaggaggccgaagacgcccacaaggagctcaag
gcccaggccagcggcatcagcccgctggagcccgaagcccgggccgagcttgaacagcag
ttgagccaggcccagcaacagctcaaggagcaacaggcccagctcaggcagttggaagcc
cagcacgtctggctcaaggaactacgccagtggcaggaagcccggcagagcgccgccgaa
caactgcaagcggccgaacaggacgcccaggccctggccccggagcgcctgcgcctgcaa
cgcctggaacaactggcgccgcagcggcaccagttcctgcgccaggcagagctgggcgcc
agcctgctgccgttgcgccagcagatccagcagcaggtcgaacagcaaggcgccctgcaa
caacagcaggaacgcctgcaacagcaactgcaggacgccggcacggccctgtcccaggcc
caggaacagcacagcaccagcgccccgttgctgcgcgaagcctttgccgaacaggccaac
ctggagcgactggggcagagcctggcccaggccgaggcccaacgcagccgcgccgagcag
gccagcaccgagggccagcaaggcatccagcaactgctggaaaaacagcgcctggtgggc
gaacgcctggagcggatcgccgggcaactggcccacagcgtcgccctcgcccccttgagc
gacgcctggaacgcctaccgcgaacgcctgcaacagctgatgctgatcggcaatcgcctg
caccagggccaggccgaactgccggccctggaacagcgcgccagcagcgccgcccagcaa
ctgagcgagcaacgcacgcagctcgaactgctctacagcgaagccggggccgagccccag
gcggtggccgagcagatccagttgctcggcaccctgctccaggacaaccgcaagcagcag
cgcgccgtcgaagagctggcccggctctgggcccagcaacgcgaactggaccagcgcggc
caggccctgcaggacaggcagcaggcggtggccgcccagcgcgaggagctgaacaaggtc
ggcctgcaggccaaggccgagctggtggtggccgagcagaccctgagcgtcacccaggcc
ctgctggagcgccagcggctggcccgcagcgccagcgtcgaggaattgcgcgggcaattg
cagagcgaccagccgtgcccggtgtgcggcagcgtcgagcacccctaccaccagcctgaa
gccttgctgcagagcctcggacgccacgacgagaacgaggaagccagcgcccgcaagacg
gtggacagcctcaaggaacagctcaacgaactgcgggcccaggtccaggggctgatcgcc
cagcagaaggaattcctccagcagcaggaacagctggcgagccagcagcaggccctggcc
ccgagcctgcaagcccaccccttgagcgccagcctcctggatcaggacccgcccaagcgc
gacgcctggctgcaacagcaactcgaccagctgcagcagagcatcacccaggacgaaaac
cgccagggcgccctgctgaccctgcaaaaagatgccgcgcgcctgcaaaaccagctgcag
gcggcaatcgacgccagccagcaggccgcccagcacctggacaagcaacagcagcaactg
aacgccgaccgccagcgcctggacgaggaactggccagcttcagccacttgctgccggca
gaggtcctcgacggcctgcgccgcgacccggccagcaccttcatgcagctcgaccagcag
gtgctgcaacgcatcgagcaactgcgcgagcagcaggaagaggccgaagaacagcaacag
cgccagctgaccctggaaaaggaacaggaccgccagttgacccgccagcagcaactggcc
gaggcccaacagcagttcgacaccctgcaccagcagcaacaggcctgccagcacaggctc
gccgaactgctgggccagcaacccagcgccgagcactggcagcagcacctggagcaagcc
gtggaccaggcccgcagcgcccaggccctggcccagcaacagcagcaggcactgcaccag
caagcgatcgagttgggcgccgagctcaaggcccgggaagaacgcctgcaagccctggaa
agcgaacaacagcagctggccgccagcatcgagcagtggcgcgccgggcacccggaactg
gatgacgccggcctgcaacagttgctggagctggacgaagaacaggtgcagcaactgcgc
cagcgcctgcaagacaacgacaaggccatcgagcaggccaaggtcctgctgcaggaacgc
cagcagcgcctggaacagcatcaggcccagcacaacggcaacctggagaccgagcaactg
gcccaggccctggaacagctgcagcaacaggcccaggccagcgaacaacaggtggcggac
ctgcgtgcacggcaaagcgaggaccagcgccgccaggccgccaaccaggccctcaaccaa
cgccttgaacaggcctacgcccagtggcagcgctgggcccggctcagcgccctgatcggc
tcggccgaaggcgacaagttccgcaagatcgcccaggcctacaacctcgacctgctggtg
caccacgccaatgcccaactgcgccaactggtgcgccgctaccgcctcaagcgcggtggc
agcatgctcggcctgctggtgctggacaccgaaatgggcgacgaactgcgctcggtgcac
tcgctgtccggcggcgaaaccttcctggtgtccctggccctggccctggggctggcctcc
atggcttccagcaccctgaagatcgaatcgctgttcatcgacgaaggcttcggcagcctc
gaccccgagtccctgcaactggccatggatgccctcgacggcctgcaggcccagggccgc
aaggtggcggtgatctcccacgtacaggaaatgcacgaacggattccggtacagatcaag
gtcagccgccagggcaatggcctgagcaccctggaggtgaaatga
DBGET
integrated database retrieval system
