Pseudomonas protegens CHA0: PFLCHA0_c32280
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Entry
PFLCHA0_c32280 CDS
T02671
Name
(GenBank) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFLCHA0_c32280
09124 Replication and repair
03420 Nucleotide excision repair
PFLCHA0_c32280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprc03021
]
PFLCHA0_c32280
03036 Chromosome and associated proteins [BR:
pprc03036
]
PFLCHA0_c32280
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c32280
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PFLCHA0_c32280
Transcription machinery [BR:
pprc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFLCHA0_c32280
Chromosome and associated proteins [BR:
pprc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PFLCHA0_c32280
DNA repair and recombination proteins [BR:
pprc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFLCHA0_c32280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AGL84998
UniProt:
A0A2C9EN91
LinkDB
All DBs
Position
complement(3600065..3602074)
Genome browser
AA seq
669 aa
AA seq
DB search
MPDNHRQLHWAQAKVYGWLLCQSLQLPSIRVSLVYFDVLSEGETALVQEHSAEALEEFFN
RQCALFLHWAQQQMHHRATRDQATRDLRFPHAEFRRGQRPLAESVYKAVSTGRCLLAQAP
TGIGKTLGTIFPMLKAMAAQQLDTLLFLTAKTPGRQLALDAARVLFSGVPGLALRVLELV
ARDKACEHLDKACHGESCPLAKGFYDRLPAARQAASQVPLLDRQALREVALEHQVCPYYL
SQEMARWSDLVVADYNYYFDFSALLFGLAQANQWQVAVLVDEAHNLVERGRGMYSASLDQ
QQLASVRSSAPQALKSPLQRLNREWNALHKEQVAEYQAYAQLPAALLKALALCVAALGDY
FNEQPRGLDSGLQGLYFELLQFARVAELFDEQQFIFDISKRALGAKRSLSRLSLRNVVPA
ALLGPRLAAARSTVLFSATLNPRGYYADLLGLPDNTVWLDVESPFDAGQLEVQIVSRIST
RYAHRQASLAPIVELMARQFAARPGNYLAFFSSFDYLQQVAGLLAREHPDIVLWCQSRGM
DEASRQDFLQQFRPEGQGIGFAVLGGAFGEGIDLPGSKLIGAFVATLGLPQLNPLNEQMK
QRMAALFGSGYDYTYLYPGLQKVVQAAGRVIRGQSDRGVLVLIDDRFAEPRVRQLLPSWW
ALDAPPAGG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaaccatcggcaattgcactgggcccaggccaaggtctatggctggttgctg
tgccagagcctgcaactgccgagcatccgtgtctcgctggtgtatttcgatgtgctcagc
gaaggcgaaaccgcgctggtgcaagagcacagcgccgaggcgctggaagagttcttcaat
cgccagtgcgcgctgttcctgcactgggcgcaacagcaaatgcaccatcgcgcgacccgg
gaccaggccacccgggacctgcgctttccccacgccgagtttcgtcgcggccagcgcccg
ctcgccgagtcggtgtacaaggcggtgagcaccgggcgctgcctgctggcccaggccccc
accggcatcggcaagaccctgggcacgatctttcccatgctcaaggccatggctgcgcag
cagctggacacactgctgtttctcaccgccaagaccccgggccggcaactggccctggat
gccgcccgggtgctgttctccggggtgccggggctggcgttgcgggtgctggagctggtg
gcccgggacaaggcctgcgaacacctggacaaggcctgtcacggtgagtcctgcccgctg
gccaagggcttttacgaccgcctgccggcggcacgccaggccgccagccaggtgccattg
ctggatcgtcaggcgctgcgcgaggtggccctggagcatcaggtctgcccctactacctg
agccaggaaatggctcgctggagtgacctggtggtggccgactacaactactacttcgac
ttcagcgccttgctcttcggcctggcccaggccaaccagtggcaggtggcggtgctggtg
gacgaggcccacaacctggtggagcgcgggcgtggcatgtacagcgcgagcctggaccag
cagcaattggcgagcgtgcgcagcagcgcgccccaggccttgaagagcccgttgcagcgg
ctcaatcgcgagtggaatgccttgcacaaggagcaggtggccgagtatcaggcctatgcc
cagctacctgccgcgctgctcaaggccctggccctgtgcgtagcggccctgggggactat
ttcaacgaacagccccggggcctggacagcggtttgcagggcctgtatttcgaactgctg
cagtttgcccgggtggcggagctgttcgatgagcagcagttcatcttcgacatcagcaag
cgcgccctgggcgccaagcgcagcctgtcgcgcctgagcctgcgcaatgtggtgccggcg
gcgctgctggggcctcggttggcggcggcccgcagtacggtgctgttctccgccaccctc
aatccccgaggttactacgctgacctgctggggctgccggacaacaccgtgtggctggat
gtggaatcgccgttcgacgccgggcagctggaggtgcagattgtcagccgcatttctacc
cgctatgcccaccggcaggcttccctggcgccgattgtcgagctgatggctcggcagttc
gcggcgcgcccgggcaactacctggcgttcttcagtagcttcgactacctgcaacaggtg
gccgggttactggcgcgcgagcacccggacattgtgctctggtgccagtcccgaggcatg
gacgaggcttcgcgccaggactttctccagcagtttcgcccagaggggcagggtatcggt
ttcgccgtactcggcggtgctttcggcgagggcatcgacctgccggggtcgaaactcatc
ggggcctttgtcgccaccctcggcctgccccagctcaacccgctgaacgagcagatgaag
cagcgcatggcggcgctgttcggctccggctatgactacacctacctgtacccgggcctg
cagaaagtggtgcaggcggcaggacgggtgatccgtggccagtccgaccgtggggtgctg
gtgctgatcgatgatcgctttgccgaacccagggtccgccagctgctgccgagctggtgg
gccctggacgcgccgccggctggcggctag
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integrated database retrieval system
