Pseudomonas protegens CHA0: PFLCHA0_c41530
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Entry
PFLCHA0_c41530 CDS
T02671
Symbol
lgrD1
Name
(GenBank) linear gramicidin synthase subunit D
Organism
pprc
Pseudomonas protegens CHA0
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
PP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AGL85917
UniProt:
A0A2C9EQH7
LinkDB
All DBs
Position
complement(4679711..4686292)
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AA seq
2193 aa
AA seq
DB search
MDNTTALKIVKGFILLPLEKRKVYLQKMLEQGISPANLPIPEVRLSQERLPLSYAQQRQW
FLWQLAPESTAYHIPKALRLRGKLNVEALQRSFDSLIARHESLRTHFVEEADTALQVVAP
EARLELVRQALPAQASQQQINAAVQDFVQAQTRKLFDLLAGPLLRVGLLQVAENDHVLVL
TQHHIVSDGWSMQVMVDELIALYIGYCQGQTAPLPALPIQYADYALWQRHWMEAGEKDRQ
LAYWTAQLGGEQPLLELPLDRPRPAVQSHRGGRLELTLEQPLSEALGSLAQREGVTLFML
LLASFQTLLHRYSGQADIRVGVPIANRNRVETERLIGFFVNTQVLKAEIDGQMSFSQLLQ
QVRQTALAAQAHQDLPFEQLVEALQPERSLSHNPLFQVMFNHQVEAVGAAGPLNLPGLSI
EALDAQGQSAQFDLTLDTVETQGRIAASLVYATDVFDAATIERLAAHWRQLLQSVASQPQ
QRIGLLPLLGADEQAQILDQWNRLQQAFPSRACVHQLIEAQAARAPQAIALTFAGQSLDY
QQLNERANRLAHKLIEQGVGPNVLVGLAVERSLEMVIGLLAILKAGGAYVPLDPAYPQDR
LQHMMQDSAIALLLTQEHLLQGLPAFAGSTWLLEQPLDGYRVDNPEVGVTPENLAYVIYT
SGSTGKPKGTLQPHHNVLRLFAATEQWFQFGAEDVWSLFHSYAFDFSVWEIFGALLYGGR
LLIVPQEVARSAQDFYPLLCSEGVTVLNQTPSAFRQLMHVACSAEPAHRLRYIVFGGEAL
EVNTLQPWFQRFGDQRPQLVNMYGITETTVHVTYRPLSVADLSLAGASPIGELIPDMSWY
LLDSNLQPVPKGCIGELYVGRAGLAWGYLNRGDLSAARFVPDPFGEAGGRLYRTGDLARY
QADGSIGYIGRIDHQVKIRGFRIELGEIEARLLELPAVREAVVLAPEGPDGPQLVAYVVP
AGLDWNGQDPLAEQLPLRDAIKAGLREHLPGYMVPAHVLFLQALPLTANGKLNRAALPAI
DGSLLQQAHVAPRSEREQQVAGIWAQVLKLEKVGLTDNFFELGGHSLLATQVMSRIRQEL
GIEAPLKLLFEGESLEDFVRLLGPETAQPLQPIPLVDRQQPLAVSYAQERQWFLWQLDPD
SSAYYIPMALRLRGSLDSRALQSSFDALIARHESLRTHFVESARGLIQVIAAQARLPISQ
QDLSLLVEAGNTDDLIKQVIDTQVRQPFDLRQGPLLRATLVRLAEDEHVLVLVQHHIVSD
GWSMQLMVEELIRLYGAQSQGQQAELPALAVQYADYAAWQRQWMEAGERERQLDYWLQQL
EGGVQVLDLPLDHPRPLQQSHKGARHGISLDGALPGALKQLAQREGVTLFMLLLASFQVL
LHRYSGQADIRVGVPTANRNRVETERLIGFFVNTQVFKAEVDGQLGFNDFLQQVKRAALQ
AQEHQDLPFEQLVEALKPERSLSYSPLFQVMFNHQAAARQDAATLEVPGLQVQMLSGEDS
TTQFDLSLDTFESGDRLWASLTYACDLFEASTIERLAQSWVQLLQGIVQQPRQRLGDLPL
LGAAEQHQLLHEWTPATGEFPSDGCVQQLVEAQALKSPESEALLFAGQCLSYRELNARAN
RLAHKLIELGVGPEVRVGVALQRTPEMVVALLAVLKAGGAYVPLDPDYPQDRLAHMLRDS
QAQILLTESALLSLLPSVESLQTLQLDAQPGWLDAYSPENPPQRATADNLAYVIYTSGST
GLPKGVAIAHRNVLALIDWSNRVYSADDLQGVLASTSICFDLSVWELFVTLSSGGSIVLA
RNALELPELADRDRVRLINTVPSAIAALHRSGQIPPSVRIINLAGEPLKQALVDSLYQQP
GLVHVYDLYGPSEDTTYSTYTRREAGGQANIGRAISNTQSYILSPDLQPVPVGSAGELYL
AGAGVTRGYLARPGLTAEKFVPNPFSSDGGRVYRTGDLTRYRADGVIEYIGRIDHQVKIR
GFRIELGEIEARLVQQAAVREAFVLAHDSENGQQLVAYIVPSEATPTVEAQAALRDSLKT
ALKEHVPDYMVPAYLLFLEALPLTPNGKLDRKALPKVDAQQMQQVYVAPQSELEQQIAAI
WADVLKLDRVGMSDNFFELGGHSLLVAQVVTRVKQQFGVDMPIKSLFGAESLAAFVEKVQ
ALRQTTSSLQDELAKSLEALKRLSPDDLEKIIS
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaccaccgcgctgaaaattgtcaaaggcttcatccttctgcccctggagaag
cgcaaggtctacctgcagaagatgctcgaacagggcatctccccggccaacctgccgatt
cccgaggtgcgcctgagccaggagcgcctgccgctgtcctatgcccagcaacgccagtgg
tttctctggcaactggcgcccgagagcacggcctatcacattcccaaggccctgcgcctg
cgcgggaaactgaatgtcgaggccttgcagcgcagcttcgacagcctgatcgcccggcat
gaaagcctgcgcacgcatttcgtcgaggaggccgacacggcgctgcaggtggtcgccccc
gaggcgcgcctggaactggtgcgccaggcactaccggcgcaggcgagccagcagcagatc
aatgcggccgtgcaggacttcgtccaggcccagacccggaagctgttcgatctgctggcc
gggccgttgctcagggtcggcctgttgcaggtggccgagaatgaccatgtgctggtcctg
acccagcaccacatcgtctccgatggctggtcgatgcaggtcatggtggatgaactgatc
gcgctctacatcggttactgccaagggcagacggcgccgttgccggcgctgccgatccag
tatgccgattacgccctctggcagcgccactggatggaggccggtgaaaaggaccggcaa
ctggcctactggacggcgcaactgggcggcgagcaacccttgctcgaactgcctctggat
cgcccgcgccccgcggtgcagagccatcggggcgggcgcctggagctgaccctggagcag
cccttgagtgaagccctgggcagcctggcccagcgggaaggggtgaccctgttcatgctg
ttgctggcctcgttccagaccctgctgcaccgctacagcggccaggccgatatccgcgtc
ggtgtgcccattgccaaccgcaaccgggtcgagaccgagcgcctgatcggcttcttcgtc
aacacccaggtgctcaaggccgagatcgacgggcagatgtccttcagccagttgctgcag
caggtacgccagaccgccctggcggcgcaggcgcaccaggacctgccgttcgagcagttg
gtagaggccttgcagccggagcgcagcctgagccacaacccgctgttccaggtgatgttc
aatcaccaggtggaagcggtgggcgcagccgggcctctgaacctgccgggcctgagcatc
gaggccctggacgcccaggggcagtcggcgcagttcgacctgaccctggacaccgtggaa
acccagggccggatcgccgcgtctctggtctatgccaccgatgtgttcgacgccgccacc
atcgagcgcctggccgcccattggcgccagttgctgcaaagcgtggccagccagccacag
cagcgcatcggcctgttgccattgctgggggccgacgagcaggcgcagatcctcgaccag
tggaaccggctgcagcaggcattcccttcccgggcctgcgtccatcagctcatcgaggct
caggccgccagggcgccccaggccattgccctgaccttcgccgggcagagcctggactac
cagcagctcaacgagcgggccaaccgtctggcgcacaagctcatcgagcagggcgtgggg
cccaatgtactggtggggctggcggtggagcgcagcctggagatggtcatcggcctgctg
gcaattctcaaggccggcggtgcctatgtgccgctggacccggcctatccccaggaccgc
ctgcagcacatgatgcaggacagcgccatcgcgttgctgctgacccaggagcatctgctg
cagggcttgccggcgtttgccggcagtacctggttgctggagcagcccctggacggctac
cgggtcgacaaccccgaggtcggggtgacgcccgaaaacctggcctacgtgatctacacc
tccggttccaccggcaagcccaagggcaccttgcagccacaccacaacgtcctgcgcctg
ttcgcggccaccgagcagtggttccagttcggcgccgaggatgtctggagcctgttccac
tcctatgcgttcgacttctcggtgtgggagatcttcggtgccctgctgtatggcgggcgg
ctgctgatcgtcccccaggaggtggcgcgctcggcccaggacttctacccgctgctctgc
agcgagggcgtgacggtgctcaaccagacgccgtcggcgttccgccagttgatgcacgtg
gcctgcagcgccgagcctgcgcaccggttgcgctacatcgtgttcggtggcgaggccctg
gaggtcaataccctgcaaccctggttccagcgtttcggcgatcagcgcccgcagttggtg
aacatgtacggcatcaccgaaaccacggtgcacgtgacctaccgtcccttgtccgtggcg
gacctgagcctggcgggggccagcccgattggcgagctgatccccgacatgtcctggtat
ttgctggacagcaacctgcaaccggtgcccaagggctgcatcggtgaactctatgtcggg
cgtgccgggctggcctggggctacctgaaccgcggcgacttgagtgcggcgcggtttgtc
ccggacccgtttggcgaggctggtgggcggctctaccgtaccggcgatctggcgcgttat
caggccgacggttcgatcggctacatcggccgtatcgaccaccaggtgaagatccgcggt
ttccgcatcgagctgggggagatcgaagcgcggctgctggagttgcctgcggtgcgcgag
gcggtggtgctggccccggaaggtcccgacggcccgcaactggtggcctacgtggtgccc
gccggcctggactggaacggccaggacccgcttgccgagcaactgcccctgcgcgacgcc
atcaaggccgggctgcgcgagcacctgccgggctacatggttccggcccatgtgctgttc
ctccaggcgctgcccctgaccgccaatggcaagctcaatcgcgctgccttgccggccatc
gacggcagcctgttgcagcaggcccacgtggccccgcgcagcgagcgcgaacagcaagtg
gccgggatctgggcccaggtgctgaaactggaaaaggtcggcttgaccgataacttcttc
gagctcggcggccattcgctgctggctacccaggtgatgtcgcgcatccgccaggagctg
ggcatcgaggcccccctcaagctgttgttcgaaggcgagtcgctggaagatttcgtccgc
ctgctgggcccggaaactgcccagccactccagccgattcccctggtggaccggcagcag
ccgctggcggtgtcctatgcccaggaacgccagtggttcctctggcagctggaccccgac
agcagcgcctattacatccccatggccctgcgcctgcgcggctcgctggatagccgggcc
ctgcaaagcagtttcgatgccttgatcgcccgccatgaaagcttgcgcacgcactttgtc
gagagcgcccggggcctgatccaggtgatcgcggcccaggcccgcttgcccatcagccag
caagacttgtccctgctggtggaggccggcaacaccgatgacttgatcaagcaggttatc
gacacccaggtacgtcagccgttcgacctgcgccaggggccgttgctgcgggccaccctg
gtgcgcctggcggaggacgagcatgtgctggtgctggtccagcaccacatcgtttccgat
ggctggtcgatgcagttgatggtggaggaactgatccggctctatggcgcccaaagccag
gggcagcaggccgagttgccggcgctggcggtgcagtacgcggactacgcggcctggcaa
cgccagtggatggaagccggtgagcgcgagcggcaactggattactggttgcagcaactg
gaaggcggcgttcaggttctggatttgcccctggaccatccgcggccgttgcagcaaagc
cacaagggcgcgcgccatggcatcagcctggatggcgccttgccgggggccctgaaacag
ctggcccagcgcgaaggggtcacgctgttcatgctgttgctggcctcgttccaggtcttg
ctgcaccgctacagcggccaggcggacatccgcgtcggggtgcccaccgccaaccgcaac
cgggtggaaaccgagcgcctgatcggcttcttcgtcaacacccaggtgttcaaggccgag
gtcgacgggcaactgggcttcaatgatttcctgcagcaggtcaaaagagccgcgctgcag
gcccaggaacatcaggacctgcccttcgaacaactggtggaagccctcaagccggagcgc
agcctgagctacagcccgctgttccaggtgatgttcaaccaccaggcggccgcccgccag
gacgctgcaaccctggaggttccagggttgcaggtgcagatgctcagtggcgaggacagc
acgacccagttcgatctgagcctggataccttcgagtccggggatcgcctctgggcctcc
ctgacctatgcctgcgacctgttcgaggcttccaccatcgagcgtctggcccagtcctgg
gtgcagttgctgcagggcatcgtccagcagccacgccagcgcctgggggacctgccgctg
ctgggcgctgccgagcagcaccagttgctgcacgagtggaccccggccaccggtgagttc
cccagcgatggttgcgtgcagcagttggtggaagcacaagcactgaaaagcccggagtcc
gaggccctgttgttcgctggccagtgcctgagctaccgggaactcaatgcccgggccaac
cgcctggcgcacaagctgatcgagctgggcgtggggcctgaagtgcgggtgggcgtggcc
ttgcagcgcaccccggaaatggtcgtggcgctgctggcggtgctcaaggccggtggcgcc
tatgtgccactggacccggattatccccaggaccgtctggcccacatgctgcgtgacagt
caggcacagatcctgttgaccgaaagcgccttgctgtcgctgctgccgtccgtggagtcc
ttgcagaccctgcaactggatgcccagccgggttggctggacgcgtattcgccggaaaat
ccgccgcagcgagctactgcggacaatctggcttatgtgatctacacctccggttccacc
ggcctgcccaagggcgtggcgattgcccatcgcaacgtgctggcactgatcgactggtcg
aaccgggtgtacagcgccgatgacctgcaaggggtgctggcttccacctcgatctgcttc
gacctgtcggtgtgggagctgtttgtcaccctgtccagcggcggttccatcgtcctggcc
cgcaacgccctggaactgccggagctggcggaccgcgaccgggtgcgcttgatcaatacc
gtgccttcggcgattgccgcgctgcaccgcagcgggcagattccgcccagcgtgcggatc
atcaacctggcgggtgagccgctgaaacaggcgctggtggatagcctctaccagcagccc
gggctggtgcatgtctacgacctgtacggcccttcggaagacaccacctactcgacctac
acccggcgcgaggccggcggccaggccaatatcggccgggccatcagcaacacccagagc
tacatcctcagcccggacctgcaaccggtgccggtgggcagtgccggcgagctgtacctg
gccggtgccggggtgactcgcggctatctggcgcgcccagggctgactgccgagaaattc
gtgcccaacccgttctccagtgatgggggccgggtctaccgcaccggcgacctgacccgt
tatcgcgccgatggggtgatcgagtacatcggccgcatcgaccatcaggtgaagatccgc
ggtttccgtatcgagctgggtgaaatcgaagcgcggctggtgcagcaggcggcggtgcgt
gaagcctttgtcctggcccatgacagcgaaaacggccagcaactggtggcctatatcgtg
ccgagcgaggccaccccgaccgtcgaggcccaggccgccctgcgcgacagcctcaagacg
gcactcaaggaacacgtgccggactacatggtgccggcctacctgctgttcctcgaagcg
ttgccgctgacccccaacggcaagctcgatcgcaaggccctgcccaaggtcgacgcccag
cagatgcagcaagtctatgtggcgccgcagagcgaactggagcagcagatcgcggcgatc
tgggccgatgtgctgaagctggatcgggtgggcatgagcgacaacttcttcgagctgggc
ggccactccctgttggtggctcaggtggtgactcgggtcaagcagcagtttggcgtggat
atgcccatcaagtcgctgttcggcgcggagagcctcgcggcctttgtcgagaaggttcag
gccctgcggcagacaacttcttcactgcaggatgaattggctaaatctttggaggccctc
aaacgtttatctcccgatgatcttgaaaaaataatttcttag
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