Pseudomonas protegens CHA0: PFLCHA0_c43150
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Entry
PFLCHA0_c43150 CDS
T02671
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c43150 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c43150 (deaD)
03009 Ribosome biogenesis [BR:
pprc03009
]
PFLCHA0_c43150 (deaD)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLCHA0_c43150 (deaD)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLCHA0_c43150 (deaD)
Ribosome biogenesis [BR:
pprc03009
]
Prokaryotic type
rRNA helicases
PFLCHA0_c43150 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AGL86074
UniProt:
A0A2C9EQX1
LinkDB
All DBs
Position
complement(4892656..4894329)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggctattcagcagcagtcgatcccgatcatc
cttgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaagaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtgactgttgtggccgtctacggcggtgcgccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggccaccgtgaaccacctggttctcgacgaagccgacgag
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggagacc
cgccagaccgtactgttctcggccaccctgccgcagtcgatccgggccatcgccgagcgt
cacctgaaggacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgccgaccagaagacctctgccgttctgagcctgctg
gaagttgaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtagccgcccgtggtctggacgtaccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggagtcctacgtacaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtgactccgcgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgccgaagttcgcctgccggacgcccaagccgttctc
gatgcccgcatcaagaagctgaccaacagcctgtcgccgctggtggctgatgctgaagcg
acccacggtgatctgcttgatcgcctgaccgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggctaccaacggtcaagcgctgaacctggccgcgatcgag
aaagagcgtccactggtgcccaacagcgctccacgtggcgatcgtcctgagcgttccggt
gaccgtcctgatcgtggtgaccgtgagcgtcgcgcgccaatgcctctgggcgaaggtcgt
gcacgctgccgtaccgcgctgggtgcccgtgacggcatcgctgccaagaaccttctgggc
gcgatcctcaatgaaggcggcctggcccgtgaagctatcggccgcatccaggtgcgtgac
agcttcagcctggtcgagctgccggaggatggtctggaccgtctgctgaccaagctcaag
gacactcgcgttgccggcaagcagctgaagctgcgtcgctatcgcgaagattga
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