Pseudomonas protegens CHA0: PFLCHA0_c47680
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Entry
PFLCHA0_c47680 CDS
T02671
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PFLCHA0_c47680 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c47680 (sbcB)
Enzymes [BR:
pprc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PFLCHA0_c47680 (sbcB)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PFLCHA0_c47680 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFLCHA0_c47680 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFLCHA0_c47680 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGL86518
UniProt:
A0A2C9ESN0
LinkDB
All DBs
Position
complement(5364406..5365917)
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AA seq
503 aa
AA seq
DB search
MPLPRFVRLALTAPERLDCGGLSVQEQAVTSLFWYDYETTGINPRCDRPLQVAGIRTDLA
LNEIDEPVNLYCQPSDDILPHPMACMITGITPGRLAEQGLGEADFMTRVHEQLARPGTCG
VGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPQGIVWPEEQG
QVSLKLERLTAANGIDHGQAHDALSDVRATIALARLVRDKQPRLYDWLFQLRSKQRVMDQ
VRLLQPMVHISGRFSAARHYIGVILPLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQR
LYTRREDLLEGELPVPLKLIHINRCPVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQ
EVWRDKLSVIYGPDEFAASDDPEQQLYDGFIADRDRRLCEQVREADPLHLAQQQWPFDDE
RLPELLFRYRARNFPETLNKAEQERWLVFCQQRLLDPQLGAPNTLESFRQGLEQSLLSAD
PVQRQVLDQWQDYVQALTRRLAL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgccccggttcgtgcggctggccctgacggcgcctgaacgcctagactgcggc
ggtctttcagttcaggaacaggccgtgacttccctcttttggtacgactacgaaaccacc
ggcatcaatccgcgttgtgatcgcccgttgcaagtggccggtatccgcaccgacctggca
ctcaacgagatcgacgagccggtcaacctctactgccagcccagcgacgatatcctgccc
catccgatggcttgcatgatcactggcatcacccctggccgtctggccgaacaaggcctg
ggggaggcggatttcatgacccgggtgcacgagcaactggcgcgccccgggacctgcggc
gtgggctacaacaccctgcgtttcgacgatgagatgacccgctacagcctgtatcgcaat
ttcttcgacccctacgcccgggagtggcagggcggcaacagccgttgggacctgatcgac
gtggtgcgcacggcttatgcgttgcgcccccaggggatcgtctggcccgaggaacagggg
caggtaagcctcaagctggagcgcctgaccgcagccaacggcatcgatcacgggcaggcc
catgacgcgctgtccgatgtccgggcgaccatcgcgctggcgcgattggttcgcgacaaa
cagcccagactctatgactggctgttccagttgcgcagcaagcagcgggtgatggatcag
gtccgcctgttgcaacccatggtgcacatctccgggcgcttttctgcggcgcgccactac
atcggcgtgatcctgcccctggcctggcatccacgcaatcgcaatgccttgattgtctgc
gacctgcacctggaccctcaggggctgctggagttggacgccgaaaccctgcgccagcgt
ttgtacacgcgccgggaagatctgctcgaaggcgagttgccggtgccgttgaaactcatc
catatcaatcgctgcccggtcgtggcgccattgagtgttctgcgcagtgaagatcaacag
cggctgcacttggacatggagctatatcagcgtcgggctgtggccttgagcgaagctcaa
gaagtttggcgggataaactttcggtgatttatggcccggatgaatttgccgcaagcgat
gatccggagcaacagttgtacgacggttttattgctgaccgtgaccggcgtttgtgtgag
caagtacgtgaggctgatccgttgcacttggcccagcaacaatggccattcgatgatgag
cgcttgccggaattactctttcgctaccgtgcccgcaactttccagaaacattgaacaaa
gccgagcaagaacgttggctggttttttgtcagcagcgtttgctagatccgcaactcggt
gcgcccaataccctggaaagtttccggcaagggcttgagcaatcgctgttaagtgcggac
ccggtgcagcgtcaggttctggatcaatggcaggactatgtgcaggctctgactcggcgc
ctggctctttga
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