Pseudomonas protegens CHA0: PFLCHA0_c53770
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Entry
PFLCHA0_c53770 CDS
T02671
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c53770 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c53770 (rhlE2)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLCHA0_c53770 (rhlE2)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLCHA0_c53770 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGL87115
UniProt:
A0A2C9ETY9
LinkDB
All DBs
Position
complement(5994575..5995909)
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AA seq
444 aa
AA seq
DB search
MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLL
QLLTLEGPKVDSNSVRALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMK
LRKGVDLLVATPGRLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKR
QTLLFSATFSDAIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFSHLLR
KNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLSAIE
MLTRQTLKRHEEQDFEPEHRVPETDASGQVVKKPKKPKKPKTSGGGGKRNLGKWVDSGEV
AEAPAVKPVRKVPAFNTGPRKRKP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccactcttggcctgatcgaacccctgctgcgcgccctcgaaaccctcggc
taccagaccccgaccccggtgcaggcgcaagccattccggcagtgctgggcgggcgtgac
ctgatggccgcagcccagaccggcaccggcaagaccgccggtttcgctctgccgctgttg
cagttgctgaccctggaagggccgaaagtcgatagcaactcggtacgcgcgctgatcctg
gtgccgacccgggaactggccgagcaggtccacgaaagcgtgcgccagtacgccgaacac
ctgccgctgcgcacctatgcggtgtacggcggggtcagcatcaacccgcaaatgatgaag
ctgcgcaaaggcgtggacttgctggtggcgactccggggcgtctgctggacctgttccgt
cagaatgcggtgaagttcagccagttgcagaccctggtgctggatgaggccgatcgcatg
ctcgacctgggattctccgaagagctcaagagcatctacgcggccctgccgaagaaacgc
cagaccctgttgttctccgccaccttctccgacgccatccgccagctggccgggcagatg
ctcaacgatccgctgagcatcgaggtcagcccgcgcaacgtggctgccaacacggtcaag
caatgggtggtgccggtggacaagaagcgcaagccggagctgttcagccacctgctgcgc
aagaatcgctggaagcaggtgctggtgttcgccaagacccgcaacggtgtggatgcgctg
gtggagaaactccagggccagggcgtgaatgccgacggcatccatggcgacaagccacag
gccacgcgtcagcgcgccctggaccggttcaaggccagtgagatccagatcctggtggcc
accgatgtggcggcccgcggcctggacatcgaagacctgcccctggtggtcaacttcgac
ctgccgatcgtggccgaggattacatccaccgcatcgggcgtaccggccgtgccggttcc
accggcgaggcgatttccctggtgtgcgccgacgaggtgaacctgctctcggcgatcgag
atgctcacccgccagaccctcaagcgccatgaggaacaggatttcgaacccgagcaccgg
gtgccggaaaccgatgccagtggccaggtggtgaaaaagccgaagaagcccaagaagccg
aaaacctccggcggtggcggcaagcgcaacctgggcaagtgggtggacagtggcgaagtg
gctgaagctccggcggtgaaaccggtgcgcaaggtgccggctttcaacaccgggccgcgc
aagcgcaagccttga
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