Pseudomonas protegens CHA0: PFLCHA0_c56550
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Entry
PFLCHA0_c56550 CDS
T02671
Symbol
fecI8
Name
(GenBank) putative RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFLCHA0_c56550 (fecI8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprc03021
]
PFLCHA0_c56550 (fecI8)
Transcription machinery [BR:
pprc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLCHA0_c56550 (fecI8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
HTH_24
Sigma70_ECF
HTH_17
HTH_31
PhyR_sigma-like
Sigma70_r3
HTH_3
HTH_11
HTH_29
MerR
FaeA
PCI
HTH_AsnC-type
MarR_2
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AGL87383
UniProt:
A0A2C9EUM9
LinkDB
All DBs
Position
6295176..6295694
Genome browser
AA seq
172 aa
AA seq
DB search
MSSVQSPHNELVGALYRDHRGWLLAWLRRNVACSQRAEDLSQDTFVRLLGRDELKAPREP
RAFLVAIAKGLLFDYFRRAALEQAYLSELMLIPEGEQPSPEEQQMILEDLKAIDRLLGKL
SSKARMAFLYNRLDGLSHAEIAERLGVSVPRVRQYLAQGIRQCYIALYGEPL
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtcagtccaaagccctcacaatgagctggttggtgcgttgtatcgcgaccatcgt
ggttggctgttggcctggctacggcgcaacgttgcctgcagccagcgggccgaggacctg
agccaggacaccttcgtgcgcctgctgggccgcgacgaactcaaggcgccccgggagccg
cgggcgtttctggtggccatcgccaagggcctgctgttcgactacttccgccgcgccgcg
ctggaacaggcttacctcagcgaactgatgctgatccccgaaggcgaacaaccgtcgccc
gaagaacagcagatgatcctcgaagacctcaaggccatcgaccgcctgctgggcaagctc
tccagcaaggcgcgcatggccttcctctataaccgcctcgacggcctgagccacgccgag
atcgccgaacgcctgggggtctcggtgccaagggtgcgccaatacctggcccagggcatc
cgccagtgctacatcgccctgtacggggagccgctatga
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integrated database retrieval system
