Pseudomonas protegens CHA0: PFLCHA0_c57560
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Entry
PFLCHA0_c57560 CDS
T02671
Symbol
rhlE3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c57560 (rhlE3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c57560 (rhlE3)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLCHA0_c57560 (rhlE3)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLCHA0_c57560 (rhlE3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGL87484
UniProt:
A0A2C9EUZ0
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All DBs
Position
6402544..6404412
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AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNR
ADYVSPYQNKNNQGRGRRPGAPAQGAGAGNPPRGGAGGGQGRSGNPRNSNGSTTGTAPAK
RSGGPRNGAPRDSQGRRDEPRNRRPNRDDQPRQEPAVQNPRGNQPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gaacggttgtttcccaacggtcatccggacaaatcccagcgtcatggcccgcgccaaccc
cgcgtactggtcctgacccccactcgcgagctggccgcgcaagtgcatgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtcgatgtgctggtggcgtgccccggccgtctg
ctggacctggctggccagggcagcgtcgacctgtcccacgtggaaatcctggttctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaagtcctcgcccgc
ctgccggccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtgaccccgccgaacaccacg
gtggagcgtatcgagcagcgggtcttccgcctgccggccagccacaagcgtgccctgctg
gcgcacctgatcaccgccggcgcctgggaacaggtcctggtgttcacccggaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgagcgctgtggcgatccac
ggcaacaagagccagaacgcccgtaccaaagcgctggccgacttcaaggccggcgaagtg
cggatcctggtcgccaccgatatcgccgcccgcggcctggatatcgaccaactgcctcac
gtggtcaacttcgagctgcctaacgtcgacgaagactacgtgcaccgtattggccgtacc
ggccgtgccggtcgctccggcgaagccatctccctggtggctccggacgaagagaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagatcgccgacggtgacctgatgggcttc
gatgccagcgcagtggaagccgagaagccggaagtgcgcgagcgtccggatgtgcgcaac
ccgcgcaatccccgtggcccacgcggcgatggcccgaacggcggtggcggtggtggcggt
cgcaaggacaagggcaaggacaagggtggcaaggaaaaacccgcccgtggcgaacgcccg
gcccgcgagcagaagcctcgtgaaggcaccccggcccgcgaacagcgtcaaccgacgccc
cgtgccgatcgcgcaccggacgagttcctcgacgacgacgtggacaacttcggtaaccgc
gctgattacgtcagcccgtaccagaacaagaacaaccagggccgcggccgccgcccaggg
gctccggcccagggtgcgggcgctggcaatccgccacgcggcggtgccggtggtggccag
ggtcgttccggcaacccgcgcaacagcaacggcagcaccaccggcaccgcgccggccaag
cgcagtggcggcccgcgcaacggcgcccctcgtgacagccagggccgtcgcgacgagccg
cgcaatcgccgcccgaatcgtgacgatcagccacgccaggaaccggccgtgcagaatcct
cggggcaaccagccgaagatcatgcacaaggaatccaaggccgatcgtttcccgacgcct
gagcagctggatcagttgccaagccgtccacggggcgaaaagccggcgctgctgacccgc
aaccgctga
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