Pseudomonas promysalinigenes: HU725_002970
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Entry
HU725_002970 CDS
T07662
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pprg
Pseudomonas promysalinigenes
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprg03019
]
HU725_002970 (hrpB)
Enzymes [BR:
pprg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU725_002970 (hrpB)
Messenger RNA biogenesis [BR:
pprg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU725_002970 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
Flavi_DEAD
Cas3-like_C_2
DUF723
Motif
Other DBs
NCBI-ProteinID:
QXI34349
LinkDB
All DBs
Position
625112..627640
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AA seq
842 aa
AA seq
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MISLPIDAVLPALRETLENRDEAVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGL
LIFDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSQ
GRMHPVDIRWGRPFQPGEFIEPRVVDNVLLALAEQPGSVLVFLPGQAEIRRVHQSLQEAL
GQRPDILLCPLHGELELSEQRAAIDSPGNGLRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHASAEILQ
ADLAGLALQLARWGVTPDQLRWLDQPPAAAFSQAQDLLARLGAFKPGSHGHLSEHGQAMA
ELPAHPRIAHLLLRGQDLGLASMACEVAALLGERDIQRGGGADLHSRLALVSGEGKTSRG
ALGGVQRARQLARQYRNLLRGKPTATVADPEHPRWLGGLLALAYPDRVAQQRRQGSAEYR
LANGRAALFAEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALFDDVLAEQVERVD
ILDWDEREQVLRAERQTKVGELVLSREPLPGLDDDARARALIGLVRRKGLNLLTWTPELR
QWQARVALLRQLDLNSEGRSQWPDLSDEALLASLDQWLQPYLGKVSRLSHFAALDLPSIL
RNLLPWPLPQRLDEWAPAHLTVPSGSNIRLDYSEHPPILAVRLQELFGLADTPRIAQGRQ
QVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPR
GS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattaccgatcgatgccgtgttgcccgccctgcgcgaaaccttggaaaaccgc
gacgaagccgtgctcgaagcgcctccgggggccggcaagaccactcgggtgccactggcg
ctgctcgatgcgccgtggctagcggggcagaccatcctcatgctcgaaccacgccgtttg
gccgcgcgggctgcggccgaacgcctggccagcgaactgggggaaaaggtcggcgagacg
gtgggctatcgcattcgcctggacagcaaggtggggccaaagacgcgcattgaggtggtc
accgagggcatcctgactcggcggttgcaggctgacccggcactcgaaggggttggtctg
ctgatattcgacgagtttcacgagcgcagcctggatgcagaccttgcgctggcgctgagc
ctcaacggccgggaactgctacgtgatgatcccccgcttaaaatccttctaatgtcggcg
actctggagggcgagcgcctgtcgcgtctgctcgacgatgcccctgtggtcagtagccaa
gggcgcatgcacccagtggatatccgctgggggcggccgttccagccgggcgaattcatc
gaaccacgggttgtggataacgtgctgctggccttggctgaacagcctggcagtgtgctg
gtgtttttgcccggccaggccgaaatccgccgtgtgcaccagagcttgcaggaggccctg
ggccagcgacccgacattctgctgtgccctttgcacggggagctggagctcagcgagcag
cgcgcggccatcgattcgccaggcaacggcctgcgcaaggtggtgctggccaccaacatc
gccgaaaccagcctgaccatcgacggggtgcgggtggtcatcgatgccggccttgcgcgc
gtgccgcgtttcgacccgggtagcggcatgacccgcctggacacccagcgcatctcccga
gccagcgccacccagcgtgccggccgtgccgggcgcctggaacctggcgtgtgctaccgc
ctgtggtccgaggcccagcatgatcaattggctgcccacgccagcgccgagattctccag
gccgacctagctggcctggctctgcaactggcgcgttggggcgtcaccccagaccaactg
cgctggctcgaccaaccgccagcggcggcgttctcccaagcccaagacttgctggcgcgc
ctgggtgcattcaaaccgggtagccatggccacttgagcgaacatggccaggcaatggcc
gaactgccggcacacccgcgcattgcccacctgctgctgcgtggccaggacttgggcctg
gcgagcatggcttgcgaggttgcggccttgctcggtgaacgagatatacagcgtggcggt
ggtgccgatctgcacagccgcttggcattggtcagtggtgaaggcaagaccagccgtggc
gccctgggcggtgtgcagcgcgcccggcagcttgcgcgccagtatcgcaacctgttgcgc
ggcaagcccacggccacggtcgccgaccctgagcacccacgctggctcggtggcttgctg
gcgctggcctatcctgaccgcgtggcgcagcagcgccgccagggcagcgccgaataccgc
ctggccaacggccgtgccgccctgttcgcggaagtggacgcgctgatgaaatgcccgtgg
ctggtcatcgctgaccttggtagccgccagggccaacgcgaagaacgtatctatctggcg
gccgaattcgacccggcgctgttcgatgatgtgctggcagaacaagtcgagcgcgtcgat
atccttgactgggacgagcgtgaacaggtactgcgtgccgaacgccagactaaggtcggt
gaactggtactgagccgtgaacccttgccgggcctggacgacgacgcccgcgcccgagcg
ctgattggcctggtgcgacgcaaaggcctgaacctgctgacctggaccccggagctgcgc
cagtggcaagcacgggtcgcgctgttgcggcagctggacctcaacagcgaaggccggagc
caatggcctgatctgagtgacgaagccttgctggcgagtctggaccagtggctgcagccc
tacctcggcaaagtgtcgcgcctgagccacttcgctgccctggacctgccctcgatcttg
cgcaatctgctgccctggccgttgccccagcgcctggacgaatgggcaccggcccatctg
accgtgccgtccggttcgaacatccgcctggactacagtgaacacccgccgatcttggcc
gtgcgcctgcaagagctgtttggcctggccgataccccacgcattgcccagggccgtcag
caggtaaaactgcacctgttatccccagcgcggcggccagtgcaagtgacccaggacctg
gccagcttttggcgtaccacctatgcagaggtgaagaaggacttgaaggggcgttacccg
aaacattattggcccgacgacccgctggtggccgaagctaccgcgcgggccaagccgcgc
ggtagctga
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