Pseudomonas promysalinigenes: HU725_005690
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Entry
HU725_005690 CDS
T07662
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pprg
Pseudomonas promysalinigenes
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pprg03009
]
HU725_005690 (rlmD)
Enzymes [BR:
pprg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HU725_005690 (rlmD)
Ribosome biogenesis [BR:
pprg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HU725_005690 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_15
RrnaAD
PCMT
Methyltransf_4
TPMT
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QXI34849
LinkDB
All DBs
Position
1226667..1228025
Genome browser
AA seq
452 aa
AA seq
DB search
MSKKKSNSGLRFQPAGGSRTPQVPVGKKQRLDIERLAGDGRGIAFVEGRTWFVSGALAGE
AVEARVLNARGKVVEARLERVLQASPERRQAPCRHYQQCGGCNLQHLPHDAQLALKQRTL
AEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDAKAKHLDVGFRAEASQEIVSIND
CAVLVQPLQSILRHLPTVLRSLSKPQAIGHVELFSGTAEAVLVRHVAPLPEDDLLRLQAF
CDQAKAQLWLQGEGEPQPCDGAATLGFALSPWQLELAWRPGDFVQVNAQVNTAMIEQALA
WLAPQAHERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNDVHNAAFFQ
ADLSQPLAGAEWAAEGFSAVLLDPPRDGAYEVVQGIARLNAKRLVYVSCNPATLARDAQV
LVGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaaaaagcaatagcggcctgcgctttcaaccagctggcggcagccgcacg
cctcaggtccccgtgggcaagaagcagcgcctggatatcgagcgcctggccggtgacggc
cgcggcatcgccttcgtggaagggcgcacctggttcgtcagtggcgccctggcaggtgaa
gcggtcgaagcgcgcgtgctcaatgcccgcggcaaggtggtcgaggcgcgccttgagcgt
gtgctgcaggccagccccgagcgccgtcaggctccatgccgccattatcagcagtgtggc
ggctgtaacctgcaacacctgccccacgacgcccagctggcgctcaagcagcggactttg
gcagagcagttgcaacgtgtggctggcgtgcagcccgaagcctgggccgcgccgctgagt
gggccggaattcggctatcggcgccgggcacgtgtggccgtgcgctgggacgccaaggcc
aagcacctggacgttgggttccgcgccgaggccagtcaggaaattgtctccattaatgac
tgcgccgtgctggtgcagcctttgcagtctattctccggcatttgccgaccgtgctgcgc
tcgctgagcaagccgcaggccatcggccatgtggagctgttcagtgggaccgccgaagct
gtgctggtgcgccatgtggcaccgctgccggaagacgatctgctgcgcctgcaggcattt
tgcgaccaagccaaggcccagctttggctgcagggtgaaggggagccgcaaccttgcgat
ggcgctgcgacgctgggctttgccttgtcgccttggcagcttgagctggcatggcgcccc
ggggacttcgttcaggtcaacgcccaggtcaacaccgcgatgatcgagcaggccttggcc
tggctcgcgccccaggcgcacgagcgggtgctggacctgttctgcgggctgggcaacttc
gcgctgccgctggcgcgccaggcccgggaggtggtggcggttgaaggtgtacaggccatg
gtcgatagagccgcagccaatgcccgaaacaacgatgtgcataacgccgcgttttttcag
gccgatttatcgcagcctttggcaggcgccgaatgggccgccgagggcttttctgcggta
ctcttggatccaccgcgcgacggtgcatacgaggtggtgcaaggcatcgcccgtctcaac
gccaagcgcttggtgtacgtatcgtgcaacccggccacactggcgcgagacgcccaggtg
ctggtcggccaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcacatgtcgaagccatggcgttattcgaagcgggctag
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