Pseudomonas promysalinigenes: HU725_006705
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Entry
HU725_006705 CDS
T07662
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pprg
Pseudomonas promysalinigenes
Pathway
pprg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU725_006705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprg03019
]
HU725_006705
03009 Ribosome biogenesis [BR:
pprg03009
]
HU725_006705
Enzymes [BR:
pprg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU725_006705
Messenger RNA biogenesis [BR:
pprg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU725_006705
Ribosome biogenesis [BR:
pprg03009
]
Prokaryotic type
rRNA helicases
HU725_006705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QXI35036
LinkDB
All DBs
Position
1439677..1441356
Genome browser
AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL
ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERTERGERGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttaatccgaacattgttgctgcc
gttctggctaccggctatgaagagccgtccgctattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgatgtgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcag
atgccgggcgttaatgtagtggcggtatacggtggtgccccaatgggcccacagctgcgt
gccattcgcaacggtgcgcaaatcgtcgtcgctaccccaggccgcctgtgcgaccacctg
cgccgcgacgaaaaagtcctctccaccgttcagtacctggtgctggacgaggcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgacgccatcccggccagc
cgtcagaccgtattgttctccgcgaccctgccatcgtcgatccgctcgatcgccgaacgc
cacctgcgtgagcccaagcacgtcaagatccagagcaagacccagaccgttaccgcgatc
gaccaggcccacctgatggtccacgctgaccagaagatcccggctgtactgcgtctgctg
gaggtcgaggaattcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggctgccgccctggaagccaaaggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggacggccgtctggacatcgtcgtc
gccaccgacgtcgctgcccgtggcctggacgtaccgcgtatcactcacgtgttcaacgtc
gacatgccgtacgacccagagtcctacgtgcaccgtatcggccgtaccggtcgtgctggt
cgtgatggccgtgcgctgctgctggtcaccccgcgcgagcgtcgcatgctgcaggtgatc
gagcgtgtgaccgggcagaaggtggccgaggcgcgcctgccgaacgcccaggctgtgctc
gatgcccgcatcaagaagctcacctcgagcctggcgccgctggttgccgaagccgaggcc
acccatggcgagctgttcgaccgcttgactaccgacctcggttgcagtgcccgtgccctg
gcttcggccctgctgcgcaaggccaccaatggtcaggcgctggacctggctgcggtagag
cgcgagcaaccgctggtgccaagcttcgcaccgcgcggcgagcgtaccgaacgtggcgag
cgcactgagcgtggcgagcgtggtgaccgcgagcgtcgtgcgccaatgccgctggccgaa
ggccgcgtgcgctgccgtaccgctttgggtgcccgtgacggtatcgctgccaagaacctg
ttgggtgcgatcctcaacgaaggtggcctggctcgtgatgccatcggccggatccaggta
cgcgacagcttcagcctgatcgagctgccggaagatggtctggagcgtctgctgaccaag
ctcaaggacactcgtgttgccggtaagcagctgaagctgcgccgttatcgcgaagactga
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