Pseudomonas promysalinigenes: HU725_006925
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Entry
HU725_006925 CDS
T07662
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pprg
Pseudomonas promysalinigenes
Pathway
pprg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU725_006925 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprg03019
]
HU725_006925 (rne)
03009 Ribosome biogenesis [BR:
pprg03009
]
HU725_006925 (rne)
Enzymes [BR:
pprg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HU725_006925 (rne)
Messenger RNA biogenesis [BR:
pprg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU725_006925 (rne)
Ribosome biogenesis [BR:
pprg03009
]
Prokaryotic type
rRNA processing factors
HU725_006925 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QXI35075
LinkDB
All DBs
Position
complement(1496470..1499748)
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPSAG
EEQPQSAAPAAPVVSAPEPSLFKGLVKSLVSLFAGKEAPAAAPVVAAPEKPAAERNGRNE
ERRNGRQQSRNRNGRRDEERKPREERAERSPREERAPREERAPREERAPRQPREDRRGNR
GEERVRELREPLDAPAVEREERTPRDERTPREERAPREERASREERAPREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERAPREERAPREDRQPRPAREERQPRPA
EQAAEQAAALAEEQLPNEELLQDEQEGTDDERPRRRSRGQRRRSNRRERQRNANGELIEG
SDEEGSEEQPQQHQATELGADLAAGLAVTAAVASSKISASAEAQANQQAERASAEAATSE
SSQADVPTAPAAQAEEAVIAPAVEQPVSEPVTVVEAGVEPVVEVAAQPAVEPVVAAEPVE
APSEAPVQAPVVKAEVAGAAPVVEGGEAEKAPLEAKEAPVAEQPAAISPAEPQVAVAEPA
TTQAAPAPTEPAPVQTPAAVEPATVMLPNGRAPNDPREVRRRKREAEAAAKAAQQAAEPV
LETADEQKPHHG
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagctctggtggac
ggccaacgtctgtacgacctggacatcgagtccggggcgcgtgagcagaaaaaggccaac
atctacaaaggcaagatcacccggatcgagccaagcctggaagccgcgttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgggtcaacatcaaggaagtcctgagcgagggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gctggccgctacctggtgctgatgcccaacaacccgcgtgccgggggcatttcccgccgc
atcgaaggcgaagagcgtaacgaactgcgcgaagccctcaacggcctgaccgtaccgggc
gacatgggcctgatcgtgcgcaccgcaggccttggccgcagcagcgaagaaatgcagtgg
gacctggactacctgctgcagctgtggaccgccatcaaggaagcctcccttgaccgcgcc
gcgccattcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtccttatcgacagcatcgatgcccaggaagaagccctgacc
ttcatccgccaggtcatgccgcagtacgccagcaaggtcaagctctacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gacctgccgtccggtggctcgatcgtgatcgacccgaccgaggccctggtctccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaagaaatcgcccgccagttgcgcctgcgtgatatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgcggttgaagagcgcgtg
cgtgaatgcctggaagccgaccgtgctcgcgtgcaggttggccgtatttcgcgcttcggc
ctgcttgagatgtcccgtcagcgcctgcgcccgtcactcggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtggagtcgctgtcgctggcgatt
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtccgcgcccaggta
ccgatcccggtagcggccttcctgctcaacgagaaacgcaattcgatcaccaagatcgaa
ctgcgaacccgtgcgcgcatcatcatcctgccgaacgatcacctggaaacgccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgaa
atcgccgccgccgaagccgaagaggctccgcagccgaccgctacccgcaccctggtgcgc
caggaagccgccgtgaaaaccgcgccggcccgtgccaatgcaccggtaccgagcgctggc
gaagagcaaccgcagtcggctgcacctgcagcgcctgtagtgagtgcacctgagccaagc
ctgttcaaaggcctggtgaaatcgctggtcagcctgttcgccggtaaggaggcacctgct
gccgcgccagtggtagccgccccagagaagcccgctgccgagcgcaatggccgcaacgaa
gagcgtcgcaacggccgccagcagagccgtaaccgcaacggccgccgtgatgaagaacgc
aaaccacgcgaagaacgtgccgagcgctccccacgtgaagagcgcgcacctcgtgaagag
cgcgccccgcgtgaagaacgtgcaccacgtcagcctcgcgaagaccgtcgcggcaaccgt
ggcgaggagcgtgtgcgtgaattgcgcgagcccctggacgccccagccgtagaacgcgaa
gagcgtacgccgcgtgacgagcgcacacctcgtgaagaacgtgctccgcgtgaagaacgt
gcttcgcgtgaagaacgcgcgcctcgtgaagagcgtgctccgcgtgaagaacgtgcacct
cgtgaagagcgtgctccgcgtgaagaacgtgcacctcgtgaagagcgtgctccgcgtgaa
gagcgtgcccctcgtgaggagcgtgctccacgtgaagaacgcgcccctcgtgaagagcgc
gctccgcgtgaagaccgccagcctcgccctgcccgcgaagaacgtcagccacgccctgcg
gagcaggcggctgagcaggctgctgcactggccgaagagcaactgccgaatgaggaactg
ctgcaggacgagcaggaaggcaccgacgacgagcgtcctcgccgccgttctcgcggccag
cgtcgtcgcagcaaccgccgtgagcgccagcgcaatgccaatggcgagctgatcgaaggt
agcgatgaagaaggcagcgaggagcagccacagcagcatcaggccactgagcttggcgct
gatctggctgcaggcctcgccgtaactgccgctgtagccagcagcaagatcagcgccagt
gctgaggctcaagccaaccagcaggccgaacgcgccagcgctgaagccgccaccagcgaa
agcagccaagcagacgtgccgaccgcaccggctgcccaagccgaagaagctgtcatcgct
ccagccgttgagcaacccgtcagcgagccagtcaccgtggtcgaagccggcgtcgaacca
gtggtcgaagtcgcggcgcagccagcggtcgaaccggtagttgctgccgagcccgttgaa
gcacctagcgaagcaccggtgcaagcccccgtggtaaaagccgaggtggccggcgcggcg
ccagtggtcgaaggcggtgaagccgagaaagctccgctggaggcaaaagaggcacccgtt
gccgagcaacccgctgctatcagcccagccgagccgcaagtggcggtagcagagccggcc
actacgcaagctgcgccagcgcctacagagcccgcaccggtgcaaaccccggcagccgtc
gagcctgcaaccgtcatgctgcccaacggccgtgctccgaatgacccacgtgaagtgcgt
cgtcgcaagcgtgaagccgaggctgctgccaaggcggctcagcaagcggccgagcctgta
ctggaaactgccgatgagcaaaaaccacatcacggttga
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