Pseudomonas promysalinigenes: HU725_007680
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Entry
HU725_007680 CDS
T07662
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pprg
Pseudomonas promysalinigenes
Pathway
pprg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU725_007680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprg03400
]
HU725_007680 (mfd)
Enzymes [BR:
pprg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU725_007680 (mfd)
DNA repair and recombination proteins [BR:
pprg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU725_007680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXI35206
LinkDB
All DBs
Position
complement(1662658..1666107)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRTRLEATGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDLTRPLLPPAELFLPVEDCFAQLKQWPRVVVSGDDIEPGAGRERFPARALPNL
AIEAKANQPLAALAAFLDQFSGRVLFTAESAGRREVLLELLERLKVRPQSVDSWTDFITG
SERLAITIAPLDDGLVLDDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSDRQVAVLVPT
TLLAQQHYNSFRDRFAEWPVKVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GVGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPQRQKISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTQLKLQAEALGIKKV
DAGPNGGKIEFEAETPVDPLTLIKLIQSQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggggccgcccttagcctggccatcgccgaagccgccagcagcgctggccgtttc
accctgctactgaccgccgacagccaggcggccgacaggctggagcaggagctacgcttc
ttcgccccggacctgccggttttgccgttccccgactgggaaaccctgccttacgacctt
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccggctgccggaa
ctgagccacggcatcctggtagtgccgatcaccactgccctgcaccgcttggcgccgacc
cgcttcctgctgggcagcagcctggtgctggatgttggccagaccatcgacgtcgagcag
atgcgcacgcggctggaggccacaggctaccgctgcgtggatacggtctacgagcacggt
gagttcgccgtgcgcggggcgctgatcgatctgttcccgatgggcagcaagctgccttat
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgatccggagacccaa
cgttcgatcgacaaggtcgactcgatccgcctgctgccggcgcgcgagttcccgatgcag
aaagaagaggtcacccgcttcaaggcgcgttttcgcgagcgcttcgatgtggactttcgc
cgcagcgcgattttccaggacctggccagcggcatcatcccggccggcatcgagtactac
cttccgctgttcttcgaagaaacctcgacccttttcgactatctgcccaccgacactcaa
gtgttctcgctgccgggtgtggaacaggccgccgagcacttctggaacgatgtgcgcggg
cgctatgaagagcgtcgaggtgacctgactcgcccattgctgccaccggccgagctgttc
ctgcccgtggaagactgtttcgcccaactcaagcagtggccgcgggtggtggtcagtggc
gacgacatcgaaccgggtgccgggcgcgaacgcttcccggcgcgggccttgcccaacctg
gccattgaggccaaggccaaccagccgctggcggcgctggcagcgtttctcgaccagttc
agcggccgcgtgctgtttaccgctgagtcggcaggccggcgcgaagtgctgctggaactg
ctcgaacgcctcaaggtgcgcccgcagtcggtcgacagctggaccgacttcatcaccggc
agcgagcgcctggcgatcaccattgcgccactggacgatgggctggtgctggacgacccg
gccattgccctggtagccgaaagcccactgttcggccaacgcgtcatgcagcgccggcgc
cgtgaaaaacgcggcgaggcggccaacgacgcggtcatcaagaacctcacagaactgcgt
gaaggcgcgccggtggtgcacatcgaccacggtgtgggccgctacctgggcctggctacg
ctggaaatcgacggccaggccgccgagttcctcactctggagtatgccgagggcgccaag
ctgtatgtgccagtggccaacttgcatcttatcgcccgctacaccggcagcgatgatgcc
ctggcgccgctgcaccgattgggttccgaggcctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctacgcccgccgcgccgcgcgc
aagggttacgcctttgccgacccagccgccgactacgccaccttcagcgcaggtttcccg
tttgaggagacccccgaccagcaagcggccatcgaggcggtgcgggccgatatgctggcg
cccaagccgatggatcggctggtgtgcggcgacgtcggtttcggcaagaccgaagtggcc
atgcgcgctgctttcatcgcagtacacagtgatcgccaagtggcggtactggtgccaacc
accctgctcgcccaacagcactacaacagcttccgtgaccgcttcgccgaatggccggtt
aaggtcgaagtgatgagccgcttcaagtcggccaaagaagtggctgcagccgccgcggac
cttgccgaaggcaagatcgacatcctgatcggcacccacaagctgctgcaggatgatgtg
cgcttcaaggacctgggccttgcgatcatcgatgaggaacaccgctttggtgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtggacattcttaccctgaccgccacgccc
attccgcgcacgctgaacatggcagtggcgggcatgcgcgacctgtcgatcatcgccacg
ccaccagcacggcgcctgtcggtgcgcaccttcgtcatggaacagaacaagagcacggtc
aaggaagccctgctgcgtgagttgctgcgcggtggccaggtgtattacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgccgacctggccgaactggtgccagaggcgcgaatc
ggcgtcggccacgggcagatgcgcgagcgcgaactggaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgaaaccggcatcgacgtgccc
agcgccaacacgatcgtcattgagcgcgccgacaagttcggcctggcccagttgcaccag
ttgcgcggccgggtcggtcgcagccaccaccaggcctacgcctacctgctcaccccacag
cggcagaagatcagcgccgacgccgaaaagcgcctggaggccatcgccaacacccaggac
ctgggcgcaggcttcgtgctggcgaccaacgacctggagattcgtggtgctggcgagctg
ctcggcgaaggtcagagtgggcagatccaggccgtcggtttcaccctctacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggcacccagcccaacctcgaacaacccctg
ggcggtgggccggagatcaatctgcgcctgccggcgctgattcccgaagactacctgcct
gatgtgcacgcgcggctgatcctctacaagcgcatcgcttcggcggccgacgaagaaggc
ctgaaggatctgcaggtagaaatgatcgaccgcttcggcctgctgcctgagccgaccaag
aacctgatgcgcctgactcagctgaagctgcaggcagaagcgctgggcatcaagaaggtc
gacgcaggccccaacggcggcaagatcgagttcgaggccgagaccccggtcgacccactg
accctgatcaagctgatccagagccagcccaaacgttacaaattcgaaggcgccacgcag
ttccgcttcctggtcccgatggaacgcccagacgaacgcttcaacaccctggaggcgctg
ttcgagcgcctgactccacagcctgcataa
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integrated database retrieval system
