Pseudomonas promysalinigenes: HU725_020410
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Entry
HU725_020410 CDS
T07662
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pprg
Pseudomonas promysalinigenes
Pathway
pprg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU725_020410 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprg03019
]
HU725_020410 (rnr)
03016 Transfer RNA biogenesis [BR:
pprg03016
]
HU725_020410 (rnr)
Enzymes [BR:
pprg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HU725_020410 (rnr)
Messenger RNA biogenesis [BR:
pprg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU725_020410 (rnr)
Transfer RNA biogenesis [BR:
pprg03016
]
Prokaryotic type
tRNA degradation factors
HU725_020410 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
AbiEi_4
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QXI33342
LinkDB
All DBs
Position
complement(4490124..4492712)
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AA seq
862 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAAEFGLHEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPAQMR
LVFDGDRALARVSGVDRRGRREGVLVEVVSRGHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV
WPDDVVKEARKFRSEVQEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRMFSG
GWRLYVAIADVSSYVRLGSALDNEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHARTREGKALREEYKAVLPD
LKNLYNLYKVLVDARHARGAIDFETQETRIIFGEDRKIAEIRPTVRNEAHKLIEECMLAA
NVATAAFLQKHEVPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTDNNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKVDTPHVKRAGAMSIPKARIYPYDVNALDQLGEQCSMTERRADEATRDVVNWLKCEFM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERTGRS
FRLGDTIEVKVMRVDLDERKIDFEVSEQQLSAPVGRKGRGSATPQSEAGEAAPQAPVEAR
ATPKPRSRKSEAAEAYFPKDAVQRNAEVRKSREMKKALMSEARSGGHASSKSDKGAKTSG
KPTKHRKGPSKSGAPRKSKNKS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctatccccagccgtgagctgatcctgcagcgccttgccgaccgtggcgaaccggccgcg
cgcgaggagctggcggcagaattcggtcttcatgaggaagaccagatcgaagcgctgcgc
cgccgactgcgcgccatggagcgcgacggccagcttatctatacccggcgcggcacttat
gccccggtggacaagctcgaccttatctgcggccgcgtctccggccaccgtgacggtttt
ggtttcctgatccctgatgacggcagtgaagacctgttcctgagccctgcgcagatgcgc
ctggtgttcgacggcgaccgcgccctggcccgtgtttctggcgtcgaccgccgtggccgt
cgcgaaggcgtgctggtcgaagtcgtctcccgtgggcatgaaagcgtagtcggccgctac
ttcgaagaaggcggcatcggctatgtcactccggacaacccgaagatccagcaggaagtg
ctggtaaccgccgggcgcaacgggggggccaagattggccagttcgtcgagatcaagatc
acccactggcctacgccgcgcttccaaccccagggtgatgtggtcgaggtgatcggcaac
tacatggccccgggcatggaaatcgacgttgccctgcgcagctacgatatcccccatgtc
tggccagacgatgtggtcaaggaagcgcgcaagttccgctccgaagtccaggagaaggac
aaagagaagcgtatcgacctgcgccatctgccgttcgtcaccatcgacggcgaggacgcg
cgcgacttcgatgacgccgtgtactgcgaacccttgggcaagctgcgcatgttctccggt
ggctggcgcctctacgtggcaatcgccgacgtttccagctacgtgcgcctgggttcggcc
ctggataacgaagcccagcaacgcggcaactcggtctatttccccgagcgcgtggtgccg
atgctgcctgaggagctttccaacggtctttgctcgctgaacccgcacgtcgatcggttg
gccatggtctgcgaaatgaccatgaataaagccggccagatggtcgattatcagttctac
gaaggcgtcatccactcccatgcccggctaacctacaacaaggtcagcagcatgcttgag
catgcccgtacccgcgagggcaaggcgctgcgagaagagtacaaagcggttctgccggac
ctcaagaacctgtacaacctgtacaaagtgctggtggatgcccgtcatgcccgtggtgcc
atcgacttcgaaacccaggaaacccgtatcatcttcggggaagatcgtaagatcgcggaa
atccgcccgacggtgcgcaacgaggcgcacaaactgatcgaagagtgcatgctggcggcg
aacgttgccactgcagcgttcttgcaaaagcacgaagtcccggctctctatcgggtgcat
gacggcccgccaccggagcgtttggaaaagctgcgcgctttcctcggcgaacttgggctg
accctgcacaagggcaaggacccatcgccgaaggactatcaggcactgctggcgagcatt
gccgggcgcccggacttccatctgatccagaccgtgatgctgcgctcgttgagccaggcg
gtgtacagcaccgacaacaacggccacttcggcttgaactacgaggcgtacacgcacttc
acctcgccgatccgccgttacccggacttgctcgtgcaccgtgcaatccgaagcgtcatc
cgctccaaggtcgataccccgcacgtcaagcgtgccggtgccatgagcatccccaaggcg
cgtatctacccgtacgatgtgaatgctctggaccagcttggcgagcagtgctcgatgacc
gagcgccgcgctgatgaagctacccgcgatgtggtcaactggctcaagtgcgagttcatg
aaagaccgcgtgggcgagaccttcccaggtgtgatcacagcggtcaccggctttggtctg
ttcgtcgaactgactgacatttatgtcgaaggcctggtgcatgtcagtgcgctgcccggt
gactattaccacttcgatccggtacaccaccgcctgtccggcgagcgtacgggtcgcagt
ttccgtttgggcgataccatcgaggtcaaggtcatgcgcgttgacctcgacgagcgcaag
atcgacttcgaagtctctgagcagcagctcagtgcgcctgtcggccgtaaaggccgtggt
agcgctacgccgcagagcgaagcgggcgaagccgcgcctcaagcgccagtcgaagccagg
gctacacccaagccgcgcagccgcaagagcgaagcggccgaagcgtacttccccaaagac
gccgtgcagcgtaatgccgaagtgcgcaagagccgcgagatgaaaaaggcactgatgagc
gaggcgcgcagtggtggccacgccagcagcaagtctgacaagggtgccaaaacgtccggc
aagccgaccaagcaccgtaaaggcccgtcgaagtccggcgcgccacgcaagagcaagaac
aagtcatga
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