Poeciliopsis prolifica (blackstripe livebearer): 129351902
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Entry
129351902 CDS
T09758
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013
Nucleocytoplasmic transport
pprl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129351902 (upf2)
03015 mRNA surveillance pathway
129351902 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129351902 (upf2)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129351902 (upf2)
mRNA cycle factors
P-body specific factors
129351902 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
129351902
NCBI-ProteinID:
XP_054876707
LinkDB
All DBs
Position
Unknown
AA seq
1307 aa
AA seq
DB search
MPAESKPSVNMDEKNVNSFTNKEKEKDKEAERRAASARDKAKEEAKAGGKKDTCKEEKKK
RLEEEKKKKEEKERRKKEEEKQKEEEDQKKKEEEEKKQQEELQKKLEEDEAKRQREEEAA
LLKEKEEGHQLHQEAWERHQGRKELRSRNQNAQEARPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFASLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRRVKLAAEKFGLAFPPSEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADL
LDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENLIDLKAFIP
AILFKDNEKSGLSKDKDDAKDGREGKDVSATEDLELDLEVLDIADEPLELEGGDEVENEE
LAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRR
KLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIET
KNKTVRFIGELSKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHL
RTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQEPEVKGYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTLFSFISFGVN
PDGTPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVW
TKDHPFPIDIDYMISDTLELLRPKMRLSCSLDDATRQAADLEKEVLVKLGMAMEKDGRSS
AMSEGEPLDEEDEDEDEDGAADTEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYL
TDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLD
VAIPLQLKSQLKKGGSGQQCMGEGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGSREKRARIEKHEVQGRQRDRDRKAKQQRQQGQAVE
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagagcaagccctcagtaaacatggatgaaaaaaacgtcaactccttcacc
aacaaagaaaaagagaaggacaaagaggctgaacggagggctgcatctgctagagacaag
gctaaagaagaggcgaaagccggtggtaaaaaggacacatgcaaggaggagaagaaaaaa
cgcctagaggaggaaaagaagaagaaagaggaaaaggagcgaaggaagaaagaggaggaa
aagcagaaagaggaggaggatcagaagaagaaagaggaggaggagaagaagcaacaggag
gagctgcagaagaagctcgaagaagatgaggccaaacggcagcgtgaggaagaggcagcg
ttgctcaaggaaaaggaggagggccaccagctgcaccaggaggcctgggaacggcatcag
ggccggaaggagctccgcagccggaaccagaacgcccaggaggcccgacccgaggaggcc
ttcttcagccgcctggactccagcctgaagaagaacacggccttcgtcaagaagctgcgc
acgctgacggagcagcagcgcgacgcactctccaacgacttcgcctcgctcaacctcagc
aagtacatcggcgaggcggtgagctcgctggtggaggccaagctgaagatttccgacgtg
ggctgcgccgtgcacctgtgctccctgttccaccagcgctacgctgagtttgcgccgctg
ctgctgcaagcctggaagaagcactttgaggccaggaaggaagacaagtctcccaatgtg
agcaaactccgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctgttcacc
gacaaggaggggctttcgctgatctacgagcagctgaagaacatcatcgggacggaccgc
gagacgcacactcacgtgtcggtggtgatcagcttctgcaagcactgtggcgacgacatt
gctggtctggtgccgcgcagggtgaagctggcggcggagaagttcggcttagcgttcccg
ccgagcgagatcatcagcaccgagaagcagcagccgttccagaacctgctgagggaatac
ttcacctccctgaccaaacacctgaagaaggatcaccgggagctgcagaacaccgagagg
cagaaccggcggatcttgcactccaaaggcgagctgagcgaggatcgccacaagcagtac
gaggagttcgccacgtcttaccagaagctgctggccaacacgcagacgctggctgacctg
ctggacgaaaacatgccggagctgccgcaggacaagaccgtgcaggaagagcacggcccc
ggcatcgacatcttcacccctgggaaacccggagagtacgaactggagggcggtatctgg
gaggacgaagacgcgcggaacttctacgaaaacctgatcgacctgaaggctttcattccc
gccatcctgttcaaggacaacgagaagagcggcctgagcaaagacaaggacgacgccaaa
gatggcagagaagggaaggatgtgagcgccacagaagacctggagctggatctggaggtg
ctggacatcgcagacgagcctctggagctggagggaggagacgaggtggagaacgaggag
ctggccaagaagctgctggatgagcaagagcaagaagacgaggaggccaacaccgggtcg
cacctgaagctgattgtggacgccttcattcagcagcttccaaactgtgtcaacagggac
ctgatagacaaggccgccatggacttctgcatgaacatgaacaccaaatccaaccggagg
aaactggtccgggccttgttcaccgtccccaggcagaggttggatcttctgcctttctac
tctcgcctggtggcgacgctgcatccctgcatgtcagacgtagccgaggatctttgctcc
atgctgaagggagacttcaggttccatatccgtaagaaggaccagatcaacatcgagacc
aaaaacaaaactgtgcgattcatcggagaactttccaagttcaagatgttctcaaagacc
gacacgcttcactgcctgaagatgctgctgtctgatttcactcaccaccacatcgagatg
gcctgcacgctgctggagacctgcggccgcttcctgttccgctcgcccgactctcacctg
cggaccagcgtcctgctggagcaaatgatgcgtaaaaagcaggcgcagcacctggacgcg
cgctatgtcaccatggtggagaacgcctactactactgcaacccgccgcccatcgagaag
gctgtgaagaagaagcggccgccgctgcaggagtacatcaggaagctgctgtacaaggac
ctgtccaaggtcaccacggagaaagtgctgcggcagatgcgcaagctgccgtggcaggag
cccgaggtgaagggctacctgatctgctgcatgatcaacatctggaacgtcaagtacaac
agcatccactgcgtggccaacctgctggccggcctggtggcgtaccaggaggacgtgggc
atccacgtggtggacggcgtcctggaggacatccggctcggcatggaggtcaaccagccc
aagttcaaccagcggcggatcagcagcgccaagttcctgggtgagctctacaactaccgc
atggtggagtcggccgtggtcttccggaccctcttctccttcatctccttcggggtgaac
ccggacggcacccccagcccgctggacccgcccgagcacctgttccgcatccggctcgtc
tgcacgctgctcgacacctgcggccagtacttcgaccgcggctccagcaagaagaagctc
gactgtttcctcatctacttccagcggtacatttggtggaagaagagcgtggacgtttgg
acgaaggaccacccgttccccatcgacatcgactacatgatcagcgacacgctggagctt
ctgcggcccaagatgcggctcagctgctcgctggacgacgccacccggcaggcggccgac
ctggagaaggaagttctcgtcaaactgggcatggccatggagaaggacggccgctccagc
gccatgagcgaaggtgagccgctcgatgaggaggacgaggatgaggacgaagatggagcc
gctgacaccgaggagcagtcgggcaacgagagcgagatgaacgaacaggaagaggatgaa
ggatctgagaacgaggaagaggagcgagaggaagaggaggaggagaacacggattacctg
accgactccaacaaggagaacgagacggacgaggagaacaatgaagtgacgatccgcggc
ggaggactgaagcatgtcgcctgcgctgaggacgaagacttcatccaggctctggataag
atgatgctggagaacctgcagcagcgcagcggcgaggcggtgaaggtgcaccagctggac
gtggccatcccgctgcagctgaagagccagctgaagaagggcggctccggccagcagtgc
atgggggagggagactcggacatctccgacaccatgcagttcgtcatgctcactcgcaag
ggcaacaagcagcagtataagatcctgaacgtccctttgtcgtctcacctggcggcgaat
cacttcaaccagcagcaggcggagcaggaggagaggatgaggatgaagaaactcaccctg
gacatcaacgagaggcaggagcaggaagactaccaggagatgatgcagtcgttcgcccag
cgtccggctccggccaacaccaaccgggagcgccggccgcgctaccagcacccgaaaggc
gctcccaacgccgacctcatcttcaaaaccggaggaagcagagagaaaagggcgagaatt
gaaaagcatgaggtccaaggcaggcagagagacagagacaggaaagccaagcagcagaga
cagcagggacaagctgtggaataa
DBGET
integrated database retrieval system
