Poeciliopsis prolifica (blackstripe livebearer): 129352336
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Entry
129352336 CDS
T09758
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382
Cornified envelope formation
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129352336 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129352336 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129352336 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129352336 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129352336 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129352336 (col4a6)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129352336 (col4a6)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129352336 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129352336
NCBI-ProteinID:
XP_054877262
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MKFLICVLTVSCALRSTHGGETSDEPCAGLDCSRGCKCFPEKGSRGRPGQMGEIGRPGPD
GPRGGLGPQGPKGEKGHIGVKGPSGVKGDKGPMGVPGFRGTDGVPGHPGQQGSRGPPGKD
GCNGTMGDPGLPGYGTGAPGYPGFQGPPGPKGQKGDPIYIGEGTPGPPGPRGPPGLRGPT
GPPGFQGPRGINGFPGPPGPPGPQGPEGSRGDIYRGGKGDKGDVGLPGPGGSPGDRSLSG
EKIVTAYKGDKGDPGPKGIKGYPGSPGPPGPFGYRGEDGEQGILGYPGPRGPTGFVGPPG
PSGPKGTTGELGFPGQPGFLGPKGDQGDTGLPGPPSYINDYGSFVQGPPGDPGFSGPPGS
TGDQGPPGFIGPPGPPGAFRIGPPGAPGFPGGAGPKGDKGNPGIPLPGPEGFQGPPGPDG
PPGPPGPPGPRDSSGRPRDPCDIYPPDRPTDAPTRGRPGIPGPPGQRGFPGDSGVKGFRG
DFGDCNCGGGGGRGLPGLPGPQGPRGSFGFQGRKGEPGNLGTPGFNGNPGAPGRVGERGF
NGRKGQKGESSFRSFGVKGDRGAPGPRGPTGETGNPGRDGLPGFSGPPGPPGDGGVGTIG
EKGFPGFPGAKGRRGAPGDPGFGYPGLPGLQGDKGEPGIPGFPGQPGPPGPRGDNSCGGV
IGAGEGTGDRQPCIIYGEPGDKGYPGGPGRPGPAGQPGFPGSPGGRGFDGPKGEKGDPGF
GGQPGPQGFPGPRGDPGVPGTPGVGYDGPRGKDGLPGLPGPKGPPGEVLGVRPGAPGLDG
VPGPTGDKGLPGSPGTPGSPGFDGRPGVSGLKGERGVDGRPGFPGLPGLPGGATNPIPGP
PGFPGSKGLIGPPGCPGYRGRKGEPGDRGFPGPAGMKGTPGLPGVNGGTGPRGPPGLPGP
GTIPGRPGAPGRKGERGLPGLIGFPGLPGRPGSPGFPGGKGFPGDRGRDGFPGGPGRFGP
KGDQGNPGPPGLPGPVPFVQKGPPGAAGAPGFQGFTGPRGDKGLPGLPGRPGSPGRPGFP
MDSKGQAGQLGFPGQPGPQGFPGRKGEGGIMGFPGMTGPRGEDGSPGFPGSPGEFGRNGG
KGPPGETFAYPGGPGVKGQPGNPGFPGPRGLDGSLGDSGFLGLRGSDGQKGISGDTGRPG
TMGPPGFPGPQGQPGFPGRQGPDGSPGLPGGPGGLGFKGLSGAPGLDGLNGLAGPKGPPG
IPGTTIGGNPGLRGAQGQKGERGVSFPGRRGFPGSKGQRGDSGAFGAPGFPGRPGPPGPS
TSGNFPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDTGDPGLPGFPGTPGPKGET
GSPGGPGFPGFPGLKGAPGDNGRGGASGAKGLPGEPGFFGFKGRRGSPGRPGRKGPPGAP
LPYIPRPAPVGDPGVPGYNGPPGGPGEPGQPGFSGRPGLKGRPGAGGELGRTGSPGFSGQ
VGDSGIPGFPGITGDQGFPGAIGRPGIPGGVGRSVSVGYTLVKHSQTTDVPMCPQGMAQL
WVGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCNPSETCYYASRNDKSFWLSTTA
PIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDLSIPTCPLGWRSLWIGYSFLMHTAA
GAEGGGQSLMSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTTVDPRLEFGAPTEQ
ETLKGGQERSRVSRCQVCSKIL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatctgtgtgctgactgtctcctgcgcgctgaggtctacgcacggaggt
gaaacgtctgacgaaccgtgcgcaggcctggactgcagcagagggtgcaagtgcttccca
gagaaaggcagcaggggtcgtcctgggcaaatgggtgagatcggacgtcccggaccggat
gggccacgcgggggcctagggcctcaagggcctaaaggagagaagggccatatcggagtt
aaaggtccatctggggtcaaaggagacaaaggaccaatgggagtgccgggatttcgagga
actgatggagtgcctggtcacccgggtcagcagggcagcaggggcccgccagggaaggac
ggctgtaacgggaccatgggggaccctggcctgcccggctatggcacgggcgctccagga
tatcccgggtttcaagggccaccggggccaaaaggtcagaaaggagaccccatctacatc
ggtgaggggacaccaggtccaccaggacccaggggcccacctggtctcagaggtccaacc
ggcccgccgggtttccaaggtccaagaggaattaacggattccccggacccccaggccct
ccagggccccaagggccagagggcagccgtggcgacatttatcgaggagggaaaggagac
aagggcgatgtgggtcttcccggacccggcggttctcccggtgaccggtctctaagcggc
gaaaaaattgtcactgcctacaaaggagacaagggtgatcctggcccaaagggcataaaa
ggataccctggatcacctggaccacctggacctttcggttatagaggtgaagacggggag
cagggcattcttggatacccaggaccaagaggtcctacgggttttgtcggaccgcctggc
ccttctggaccgaaagggacaacgggggaactgggtttcccgggacaaccaggattcctt
ggacccaagggagaccaaggtgacactggactcccaggacctccaagttacatcaatgat
tatggctcttttgttcaaggacccccaggcgacccgggcttttccggccctccgggtagc
accggtgatcagggacctccaggattcatcgggcctccaggaccgccaggcgctttccgc
attggtcctccaggagctccgggctttcccggtggcgccgggccaaaaggagacaaggga
aacccgggcataccacttcccggccctgagggtttccaaggtccccctggacctgatggt
cctcctggtccccctggtcctccaggtcctcgagacagctcaggccggcccagggacccc
tgtgatatctatcctcctgacaggcccacagacgcccccacaagaggccgtcctggaatc
ccagggccgcctggccagagaggatttccaggagactcgggagttaaaggctttagaggt
gactttggtgactgtaactgtggaggaggaggagggagaggcctgcccgggttacctgga
cctcaaggaccaagaggaagcttcggcttccaagggcgtaaaggtgaacccggtaacctg
ggtactcctggtttcaacggcaatccgggggcccctggtcgtgtgggtgagaggggattc
aacgggcgtaaaggacagaagggggaatcgtccttccgcagtttcggggtgaagggagat
cgaggggcacctggacccagaggacctacaggtgaaacaggaaaccctggccgtgacggt
ctgccgggcttctctggacccccgggaccgccgggtgatggtggtgttggcacaatcggt
gagaagggtttcccaggatttcctggagccaaaggtcgacgcggtgcccctggtgatcct
ggattcggctaccccggcctaccgggccttcaaggtgataaaggagagcctgggatccct
gggtttcctggacagccaggtccaccaggcccgagaggtgacaacagctgtggaggggtt
attggcgccggagagggaacgggtgataggcaaccttgcatcatatatggtgaacctgga
gacaaaggttatcctggcgggcctggacggccaggccccgcaggtcagccaggcttcccg
ggatcccctggaggtcgagggtttgatggccccaagggagagaagggagatcctggtttt
ggaggccaaccaggaccacaaggttttcctggacccagaggagatcccggagttccaggt
actccgggagttggctacgacgggcccagggggaaagacggccttccaggactgcccgga
cccaaaggcccgcctggagaagtcctgggagtaagacctggagctccaggactggatggc
gtacctggtccaaccggagacaagggcctgccagggagtccaggaacacccggatcaccc
ggcttcgatggacggcctggtgtttccggtctgaagggggagcgtggagtggatggccgg
ccgggttttccgggtcttcccggacttccaggtggagcaaccaatcctatccccggtcca
cccggatttcccggcagcaaaggactcatcggaccaccaggctgcccaggttaccgcggc
cggaaaggtgaaccgggagatcgaggattcccgggccccgctggaatgaagggaaccccg
ggactccctggtgtcaacggaggaacaggtccgaggggaccccctggactgccaggcccg
ggaaccattcctggaagacccggagcgccgggaagaaagggtgaaagaggactcccggga
ctgataggtttccccggactaccgggtcgtcccgggagtccgggatttcccggcgggaaa
gggtttcccggagaccgtgggagagatgggtttcctggcggtcctggacggtttggaccg
aaaggtgaccaaggaaaccccggccccccgggccttccaggccctgttccttttgtgcag
aaaggcccaccaggggccgccggagccccgggctttcagggctttactggacctagaggt
gacaagggtctcccaggcctgcctgggcgtccgggttctccgggacgtcccggcttcccc
atggacagcaaaggccaggccggacagctgggtttccccgggcagcccggcccacagggt
ttccctggaagaaagggggaaggaggaatcatgggattcccgggcatgactggaccgagg
ggtgaagacggctcaccgggattccctggaagtcctggagaattcggtcgaaacggagga
aaaggtccacctggagagacgtttgcctatcctggaggaccgggagtgaaaggccagccg
ggaaatccaggttttccgggccctcgaggcctcgacggttcccttggcgacagcggcttt
ctgggactgcgtggctccgatggacaaaagggcatttccggtgacacggggcgtcccgga
acgatgggtccacctgggttcccggggccgcagggtcagcccggattccctgggagacaa
ggaccggacgggtccccgggactgcccggaggtccaggtggcctcggttttaaaggtttg
tctggagcgccggggctggatggactcaatggcctcgccggtccgaaaggcccgcctgga
atcccaggtacaacgataggaggaaacccaggcctccgcggtgcgcaggggcagaaagga
gagagaggtgtttccttccctggacgacgaggcttccctggatcaaaaggacagagagga
gattcgggagcttttggagcgccagggttccctggacgacccggacctcctggtccgagt
acttcaggaaacttcccggggcctgtgggagaccccggacttcctggattggatggagaa
tacggtttccagggccctcccggtcctcctgggccaccgggtcccggcacagcacaggga
gacacgggagacccagggctcccaggattccctggaacccctggcccgaagggagaaaca
ggaagtcccggaggtcccggattccccggattccctggcttaaaaggagctccgggtgac
aacggacggggcggtgcttcgggtgcgaaaggattgcccggagagcccggattctttgga
ttcaaagggcgtcgaggatcaccggggcgacctgggcgtaagggtcctccaggagcccca
ctgccttacataccgcgacctgcacctgttggagaccctggtgtccccggctacaacgga
ccacccggtggtcccggagagcccggccagcctggtttcagcggacggccaggtctaaag
ggtcgtccaggcgctgggggtgagctcggcaggaccggatcgcccggtttttctgggcag
gttggggattcgggcatccctggtttcccagggatcactggagatcaaggttttcccgga
gccatcggtcgtcccggtattcccggcggcgtcggccgcagcgtcagcgtcggctacact
ctggtgaagcacagccagaccaccgatgttcccatgtgtccccaaggcatggcccaactg
tgggtaggatacagcctgctgtacgtggagggacaagagaaggcacacaaccaagacctt
ggtcagccgggctcgtgcctccccaggttcaacaccatccccttcctctactgcaacccg
tctgagacctgctactacgcgagccgcaacgacaaatccttctggctctccacgaccgcg
cccatccccatgatgcctgtggccgaggaacagattcggccttacatcagcaggtgttcg
gtgtgcgaggcgccgtctcaggcggtggcggtccacagtcaggacctatccatccctacc
tgcccactcggctggaggagtctttggatcggatattccttcctcatgcacacagcagcc
ggcgctgagggcggcggtcagtccctgatgtctcccggctcttgcctggaagacttccgc
tctaccccgttcatcgagtgcaacggcgccaggggcacctgccactacttcgccaacaag
tacagcttctggctgaccacagttgacccccggctggagttcggcgcgccgacagagcag
gagaccctgaagggcggtcaggaacgctccagggtcagccgctgccaagtctgcagcaag
atcttgtag
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integrated database retrieval system
