Poeciliopsis prolifica (blackstripe livebearer): 129352337
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Entry
129352337 CDS
T09758
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382
Cornified envelope formation
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04518
Integrin signaling
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129352337 (col4a5)
04518 Integrin signaling
129352337 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129352337 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129352337 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129352337 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129352337 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129352337 (col4a5)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129352337 (col4a5)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129352337 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129352337
NCBI-ProteinID:
XP_054877266
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MTRGLRRLRQPAWVVIWLVLYAAVQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGFPGPPGLPGEKGDRGDVFTTNNFGQIGEVGLPGL
PGSPGSPGPIGLPGPTGPPGFQGFQGIPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQVRPPPTEIQRGDKGDPGPPGPPGDPGNPGPPGPYGGQKGEKGEPGEAGKR
GKPGKDGEPGAPGYTGLKGEPGSPGLPGRDGERGQKGDRGFPGPPGQVIRPNGASVGQKG
EPGFPGVPGAKGERGPPGFSGPPGSPGVPGIGGSGPPGPPGFPGDKGQKGEPGTPSIALP
GPPGRAGNPGNPGPQGPPGPPGYTSPIDNCLPGEPGLPGIQGAKGFPGEQGQKGQKGETC
VNCIDGGNPVPGPTGPPGPPGFPGSPGPQGVKGEPGLPGTPGLGGAPGIPGPIGAPGFPG
EKGEPGDTFGGGSGVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGPPGPKGTPGSLLLKGE
RGPPGDTGPPGIPGDRGPPGGPGYGVPGSPGQKGVQGSSGLPGSPGQQGVKGEPGPTVTE
KGQPGPKGMDGNPGSPGPPGPRGLDGQPGLPGFPGPKGDPGQPGIGLPGPAGVKGFPGIP
GQPGTPGKVGRPGTDGVPGPPGFPGPKGEAGFGLPGPPGSPGLPGAKGFPGQKGDPGFPG
NPGGPGRPGFDGGPGLKGEPGSPGQPGPRGPPGGSTGGVPGPPGPPGPQGPIGPQGYPGG
SGEKGDPGPPGLDIPGSPGDRGNPGFPGPPGPIGIPGPPGGPGRDGTPGFPGPKGDMGPM
GPPGPSGGPGSPGGPGAPGFKGEPGFPGINGIPGGPGSKGEKGDLGAPGLPGPSGPVDIR
GAKGDPGAPGSPGLPGPKGIEGLPGDAGLPGQDGRPGIPGPPGLKGEPGIPGVPGGPGSP
GPKGTMGEMGIPGPPGLKGTPGFPGRPGTPGQPGTPGLQGPKGDPGSAGVGPPGPQGQKG
DPGQPGFPGSPGAKGGPGTPGLPGLPGLPGAKGDVGLPGFQGPPGIPGPKGLDGGPGAPG
LSGAPGRPGESGRPGPPGPIGEKGQPGRDGIPGPAGVKGEPGIPGFGVPGPPGIPGPPGE
KGDPGLPGPSGGPGFPGPKGDSGFPGSPGPPGVSGPPGPPGVPFQGPKGNQGPPGPPGRA
GVPGPEGPRGLPGSGGVKGEKGNPGNPGLPGQPGQKGDLGFPGAPGPSGGPGGPGPKGDP
GFPGVAGFPGPKGEPGAPGPSGLPGDPGGDGAPGPPGDPAASPVDYVKGERGPPGPRGSP
GATGPPGPPGAPGSSGLPGPSGDPGSPGPPGFNGPPGRKGDTGPAGQPGQKGNPGPPGSD
GPQGPPGIPGSGSAAHGFLLTRHSQSEITPECPSGTNFIYDGYSLLYVQGNERAHGQDLG
TAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLEPMPMSMEAVTGESIKPYISRC
SVCEAPAMVIAVHSQTIQIPSCPANWKSLWIGFSFMMHTSAGAEGSGQALASPGSCLEDF
RSTPFIECHGRGSCNYFSNSYSFWLATVERLEMFKKPQPETLKAGNLLTRVSRCVVCMKV
T
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaggcttgaggcgcctgcgacagcctgcctgggttgtgatttggctcgtactg
tacgccgccgtgcaactgtccgactctgcggcctgcaatggatgtggaggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggagaggggtttcccaggtctcaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaacaagaggagagaaggga
agtgatggaccttcaggaccatctggtccaaaaggaataagaggaccacctggattgcct
gggttcccaggaacgccaggacttccaggtctgccaggacaggatggacccccaggcccg
aggggagtgccgggttgtaatgggacaaagggtgaacctggttttccaggaagttcagga
atacctggacgacaaggatttccaggtccacctggtctcccgggagaaaagggagaccgt
ggagacgtgtttaccaccaacaattttggacaaataggagaagtcggtttgcccggattg
ccgggatctccgggtagtcctggacccataggtttaccaggcccgactggccctccagga
ttccaaggcttccagggtattccaggtcctccaggtcctcctggaccaaagggaaacatg
ggtttgaactttgaaggtcccaaaggagacaagggtgatcaagggttgccgggacctcct
ggtcctccgggaccgggtcagggggagcaggtcagaccaccaccaacagagatccagaga
ggggacaagggtgaccctggccctccaggtccaccgggtgacccaggcaacccaggtccg
cctggtccctatggtggccagaagggagagaaaggagaaccaggagaagcaggaaaacga
ggaaaacccggcaaagacggagaacccggagctccaggatacacaggactcaaaggagag
cctggaagtccaggtctcccgggccgagatggagagagaggacaaaaaggcgacagaggt
tttccgggtcctccaggacaggtcattcggccgaatggagcttctgttggtcaaaaaggt
gaaccaggttttcctggagttcctggagctaaaggagaaagaggaccaccaggtttctcg
gggcctccgggatccccaggagttccaggcataggcggcagcggtcctccaggtcctcct
ggcttccctggagacaaaggtcagaagggagaacccggcactccttcgattgccttgccc
ggtcccccaggacgtgcgggaaacccagggaatcctggtccacaagggccgcctggtcct
cccggctatacctcaccgatcgataactgccttcctggagagcctgggcttcctggaatc
cagggtgcaaaaggcttccctggagagcaaggccagaaaggtcagaagggggaaacctgt
gtgaactgcattgacggaggtaatcctgtacctgggccaacagggcctccaggaccgcca
ggcttcccaggctctcctggcccgcaaggtgtcaagggagaaccaggtcttccaggaaca
ccaggccttggtggagcccccggtattcctggtcctataggtgctcctggtttccctgga
gagaaaggagagccaggagacaccttcggaggtggtagtggtgtgaaaggagagaagggt
gacagtggtttccctggaccacctggtctgcctggcctggatggtcgacccggtcgtgat
ggagcgcctgggcctcctggccccaagggaactcctgggtctctgctcttaaaaggagaa
cgaggaccccctggtgacacaggtccgcccggcatcccaggagacagaggtccgccaggc
ggccctggctacggagtcccgggttcaccagggcagaaaggtgttcaaggcagctcagga
ttacctggctctcccggacaacaaggtgtaaaaggcgaaccaggtccaacagtcacagag
aagggtcagccaggacccaaagggatggatggcaacccagggtcgcccggtccaccaggt
ccacgaggtttagatggacaacctggtttaccaggtttccctggaccaaagggtgatccg
ggacaaccgggcatcggccttccaggtcctgcaggagttaagggttttccgggtatcccg
ggtcagcccggaacacctggaaaagtaggtagaccaggaacagatggagtccccgggcca
ccagggtttcctggaccaaagggtgaggcaggctttggacttcctggtcctccaggttca
cctggactaccaggagctaaaggattccctggacaaaagggagatcctggtttcccgggc
aacccaggtggaccagggcgacctgggtttgatggcggaccaggacttaaaggggagccc
ggctcaccaggccaacctggacctcgtgggccccctggaggctcaacaggtggtgtacca
ggtcctccgggccctcctggaccccaagggcctattggaccacaaggatacccaggagga
agtggagagaaaggagacccaggtccaccaggcttagacatccccgggtcaccaggtgac
agagggaatcctggttttcctggaccccctggaccaataggaatcccaggaccccctgga
ggacctggacgggacggcacacctggatttccaggtccgaaaggtgacatgggtccaatg
ggacctcctggaccatcagggggacctggctctccgggaggacctggtgcaccaggtttt
aaaggtgaaccaggatttccaggcattaacggcatcccaggtggacctggttctaaagga
gaaaagggagacctaggtgccccgggactcccaggtcccagcgggccagtagatataaga
ggagctaaaggagatcctggagctccaggatcacctggccttcctggacccaaaggcatt
gaaggtctccctggtgacgctggactgcctggacaagatggacgccctggcattcctgga
ccgccagggcttaagggagaacctggtatcccaggggttcctggtggtcctggatctcca
ggtccaaaaggcacaatgggagaaatgggaattccaggccctccggggctaaaaggcaca
ccaggtttcccaggtaggccaggaaccccaggtcagccaggaacacctggcctccaagga
ccaaaaggtgacccaggttctgctggcgttgggccacccggaccacagggacaaaaggga
gatccaggtcagccgggattcccaggaagtcctggagctaaaggaggtccgggaacacct
ggtcttcctggtttaccagggttaccgggggctaaaggagatgtaggccttccgggattc
caaggtcctcctgggatccccggtccaaagggtcttgatggtgggcctggtgcccctggt
ctctcaggagctccaggtagaccaggagagtctggtcgaccagggccaccaggaccgatt
ggggaaaagggtcagccgggaagagatgggatcccgggaccagccggggtcaaaggagaa
ccaggaattcctggctttggcgttccaggtcctccagggattccagggccgccaggtgaa
aaaggagacccaggcctacctggtcctagtggaggtccaggatttcccggcccaaaaggg
gacagcggctttccaggttctccaggtcctccaggtgtcagtggccctccaggtcctcca
ggagtaccattccagggccctaaaggaaatcaaggaccccctggaccacctggaagagca
ggtgtgcctgggccagagggtccccgcggtctcccaggaagtggcggtgttaagggagag
aaggggaaccccggaaatccgggtctgcctggccagcctggtcaaaaaggagatcttggt
tttccaggagcaccgggcccctctggaggtcctggtggccctggtccaaagggagatcca
ggatttccaggcgttgccgggttcccaggaccaaagggagagccaggagctcctggtccc
agtggacttcctggagatcctgggggcgacggagcacctggccctcctggagatcctgcg
gcttcacctgttgattatgtgaaaggagagcgaggacctccgggtccacgaggaagcccg
ggtgctacaggcccacccggtccgcctggggcgcctggatcctcaggtctaccaggcccc
tctggagatcccggttcccctggtcccccaggcttcaatggcccacctggcaggaaggga
gacactggacctgcagggcaacctggccaaaagggcaaccctggcccacctgggtcagac
ggtccacagggtccaccgggtattccgggctcagggtcagcagcccacggcttcctcctc
acccgacacagccagagcgaaataacgccagagtgtccttctggaaccaacttcatctac
gacggatattccctgttgtacgtgcaaggcaacgagagggctcacggacaggacctcggc
accgccggcagctgcctgcgccggttcagtcccatgcctttcatgttttgcaacatcaac
aacgtctgcaacttcgccgcccgtaacgactactcctactggctgtcaactttggagccc
atgcccatgtccatggaggctgtgactggagagagcatcaagccttacatcagcaggtgt
tctgtgtgtgaagctccagccatggtgattgctgtccatagccagaccatccagattcct
tcttgtcccgcaaactggaaatccctgtggatcggattctccttcatgatgcacaccagc
gcgggcgccgagggctccggtcaggccctggcctcccccggctcctgcctggaggacttc
cgcagcacacccttcatagagtgccacggcagaggctcgtgtaactacttcagcaactcc
tacagcttctggctggctactgtggagagacttgagatgttcaagaaaccccagccagag
actttaaaggcaggcaacctcctgacacgcgttagccgctgtgtggtttgcatgaaggta
acgtaa
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integrated database retrieval system
