Poeciliopsis prolifica (blackstripe livebearer): 129353522
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Entry
129353522 CDS
T09758
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129353522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129353522
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129353522
Spliceosome [BR:
pprl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129353522
Complex C
U4/U6.U5 tri-SnRNP related factors
129353522
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
nSTAND3
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129353522
NCBI-ProteinID:
XP_054878850
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MAQLEQWVNDRLHDILGLSDRYVSQFMIGIARKASXPEDLVSRLEQTGTIDIDQSVSAFA
KELFEKIPRQQVIEKPSKALERQAIEMDRKNRTYTLLEDSDSDEEAAADKQRGKKKDKDR
GGKRKNIRQKKASESSSDDETPKRGGSVLEDHRSLKKEEEEEWEKEERERLLDIEERDAF
AQRVRQKDKEKTRNIAERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWEYLKKREEE
KLEDLEAEIIDDEYLFSKEELTERERRELEYKRTLRDLAKDYKQAGAKEQEERKNRYYMP
EERRSKDVPQRDLELDEAPMELGGEQGRWEEERLKTASLNFGARKERELGLKQEQDRYQL
VLEEEEMIDFVSTAITMKGTRSDKDEAEPALSQAELKKRSMQEVRRSLPIFPYREDLLAA
ITEHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVAARVAEEMSV
KLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIDEAHERTLHTDIL
FGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYL
DACVVSVLQIHVTQAPGDILVFLTGQEEIEACCEMLQERCRRLGSKIAELVVLPIYANLP
SDMQAKIFSPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVT
PCFQASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTIPEIQRTNLGNVVLLLKSLGI
NDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASE
QYKCSEEVLTIAAMLSVNNXIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWVESG
YSTQWCYENFIQFRSMRRARDVRDQLEGLMERIEVEVVSCSGDNVPIRKAVTAGYFYHTA
RLSKGGYRSVKHQQTVFVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVA
PHYYKSKELEDSSSKKMPRKQGKAREELG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctggagcagtgggtgaacgaccgtctccatgacatcctcggcctgagcgac
agatacgtctcccagttcatgatcggcatcgctcgcaaagcgtccnagccggaggacctg
gtgagccgcctggagcagacgggaacaatcgacatcgaccagagcgtctctgccttcgca
aaggaactgtttgaaaaaattccccgtcagcaggttattgagaagccttccaaagccctg
gagcgccaggccatagagatggacaggaagaaccggacctacacgctgctggaggacagc
gacagcgacgaagaggcagcggcagacaaacagagaggcaagaagaaagacaaggacaga
ggaggcaagaggaagaacatcagacagaaaaaagccagcgagtcgtcgagcgatgatgaa
acgccaaagaggggaggttctgtcctggaggaccacagatctttgaagaaagaagaagaa
gaggagtgggagaaggaggagagggagcgactgctggacatcgaggagagagacgccttc
gcccagagagtcaggcagaaagacaaagaaaagacgcggaacatcgccgagcggacggat
aaaaaggcctatgaagaagctcagaaacgactgaagatggctgaagatgatcagaagaac
atgttgccggagctgaggaagcgttcccgttgggaatatctgaagaaaagagaggaggag
aagctggaggacctggaggcggagatcatagacgacgagtatctgttctccaaggaggag
ctgacggagcgcgagaggcgggagctggagtacaagcggaccctccgggacctggccaag
gactacaagcaggccggggccaaggagcaggaggagaggaagaaccgctactacatgcct
gaggagaggaggagcaaggacgtcccccagagggatctggagctggacgaggcccccatg
gagctgggaggggagcagggccgctgggaggaagagcggctgaagacggcctctctcaac
ttcggagccaggaaggagcgcgagctgggcctgaagcaggagcaggaccggtaccagctg
gttctggaggaggaggagatgattgacttcgtcagcacggccatcaccatgaaggggacg
cgctccgacaaggacgaggcggagccggcgctgtcgcaggccgagctgaagaagcgctcc
atgcaggaggtgcggcgcagcctgcccatcttcccctacagggaggacctgctggccgcc
atcaccgagcaccagatcctggtcatagagggcgagacgggctccgggaagaccacccag
atcccacagtacctgctggaggacggctacaccaaaggagggatgaagatcggctgcacg
cagccccgcagggtggcggccatgtctgtggcggcccgcgttgccgaggagatgagcgtg
aagctggggaacgaggtggggtacagcatccgcttcgaggactgcacgtctgaacgcacc
gtgctgaagtacatgacggacgggatgctgctccgagagttcctgaccgaacccgacctg
gccagctacagtgtgatcatcgacgaggcccatgagcgaacgctccacaccgacatcctg
ttcggtctcatcaaagacatcgctcggttccgacccgacctgaaggttctggtggctagc
gccacgctggacacggagcgattttcctgcttcttcgacgacgctccggtgttcaggatt
cccggcaggagattccccgtcgacattttctacacgaaagctccggaggcggattacctg
gatgcttgtgtggtttcagtgctgcagattcacgtcacccaggctcccggggacatcctg
gtcttcctcaccggacaggaggagatcgaagcgtgctgcgagatgctgcaggagagatgc
aggcgtctggggtcaaagatcgctgagctggtggttctgcccatctatgccaacctgccg
tctgacatgcaggccaagatcttcagcccgactcctcctggagcccggaaggtggtggtg
gccaccaacatcgcagaaacgtctctgaccatagacgggatcatctacgtcatcgacccc
ggcttctgcaaacagaagagctacaacgcgcgcacgggcatggagtcgctcatcgtcacg
ccctgctttcaggcttcagccaatcagagagcaggacgggcgggcagagtggctgctggg
aaatgtttccgcctctacacggcctgggccttcaagcacgagatggaggagacgacgatc
cctgagatccagaggaccaacctggggaacgtggtgctgctgctgaagagcttaggaatc
aacgacctgattcactttgacttcatggacccgccgccccatgagaccctggtgttggcc
ctggagcagctgtacgcgctgggagccctcaaccacctgggggagctcaccaagctgggt
cgcaggatggccgagttaccggtggatcccatgctgagtaaaatgatcctggcctcagag
cagtacaagtgttcagaggaagtgctgaccatcgccgccatgctgtcggtgaacaacnnc
atcttctaccggcccaaagacaaggtggtgcacgccgacaacgccaggatgaacttcgtg
gttccgggcggagaccacctggtgctgctcaacgtctacacacagtgggtggagagcggc
tactccacccagtggtgctacgagaacttcatccagttccgctccatgaggcgagcccgg
gacgtccgggaccagctggagggtctgatggagcgcatcgaggtggaggtggtcagctgc
agcggggacaacgtccccatccgtaaggcggtgacggccgggtacttctaccacacggcg
cggctcagtaagggcggctaccggtcggtgaagcaccagcagacggtgttcgtccatccc
aacagctcgctgttcgaggagcagccgcgctggctcatctaccacgaactggtcttcacc
accaaggagttcatgagacaggtgatagagatcgacagcggctggctgctggaggtggcg
cctcactactacaagagcaaagagctggaggacagcagcagcaagaagatgccccggaag
cagggcaaggcccgggaggagctgggctga
DBGET
integrated database retrieval system
