Poeciliopsis prolifica (blackstripe livebearer): 129353600
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Entry
129353600 CDS
T09758
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprl04121
]
129353600 (pdzrn3b)
Enzymes [BR:
pprl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129353600 (pdzrn3b)
Ubiquitin system [BR:
pprl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
129353600 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-TRAF
Sina_ZnF
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_6
TRAF3_RING
RING_XB3-XBAT31
IBR_1
Motif
Other DBs
NCBI-GeneID:
129353600
NCBI-ProteinID:
XP_054878933
LinkDB
All DBs
Position
Unknown
AA seq
1048 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVTLQHLAEHAETCDFSPVKCGNIGCEEVV
SARDLEAHMREACEHRAAGICEGGCGLTLTQREQRSNGHCCVRALKAQNGALQCRLLVLD
RELKKEAIRANQREKALLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKED
NTKSVTAVLLREAGSLGFNIIGGRPCADDNDGTSNEGIFVSKIVEKGPADKEGGLQIHDR
IMEVNGKDLSKATHEQAVEAFRTAKEPIMVQVLRQGTYPQLLAPITDTQMSDISTQTDIT
LQHIVALTKLPPTSPPMMELEEYLLPEESPPEHTYFDPNDFLEGIQQEIEREGLEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTTEGNQNVSLLVARPEIQLDGGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
VLEQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTTASNTL
GSCRKLTYSQDTLGSTDLPFSGESLISADYADADFLGIPADECERFRELLELKCQMRSGG
AQGLFSLASGGQTEEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQCRESWMLHNS
GFHNYNTSIDARRHELPDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGAK
NQAAVRLSGSGVLNGKTHKPLLSPVQEAGGPRRCRVSSKDLDRELQAESKERNLGETGKG
GRGFQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAVSPSDHEPR
MEWKVKIRSDGTRYITKRPVRDRLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEER
KQHAMRAKEQKQRREFMKQSRVDCLKDQSAPEDKKEPNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggacttcaaatgcaacttg
tgcaacaaagtcctggaggatccactgacgactccgtgcggccacgtcttttgctccggc
tgtgtgctgccctgggtcgtccagcagagcagctgccccgtcaagtgccagcgcatctcc
gccaaggagctcaaccacgtcctgcctctgaagaatctcatcctgaagctggagatcaaa
tgcgacaatcacgcccggggctgcgacgctgtggtgacgctgcagcatctggccgagcac
gccgagacgtgcgacttctccccggtcaagtgcggcaacataggctgcgaggaagtggtg
agtgctcgggacctggaagcgcacatgcgggaggcgtgcgagcatcgggcggcggggatc
tgcgaggggggctgcgggctaacgctcacgcaacgggagcagaggtcaaacggccactgc
tgcgtgagagccctgaaggcgcagaacggcgcgctgcagtgcaggctgctggtcctggac
agggagctgaagaaggaggcgatcagggccaaccagagggagaaggcgctgctggcccag
ctgtcggctgtgcacagcgagctgcagatgacggcgctcaagtaccagaagaaattcacc
gagtacagcgagagaatcgactcgctcaccaagaccgtggctttctcatgcaaggaagac
aacactaagagtgtgacagctgtcctgctccgcgaggccggatcgctgggttttaacatc
ataggaggaaggccatgtgcggacgacaatgacggcacttccaatgaagggatctttgtg
tccaagattgtggagaaaggtccagcagacaaggagggaggccttcagatccatgacaga
ataatggaggttaatgggaaggacctctcaaaagccacccatgagcaagcagtggaggcg
ttccgcaccgccaaggagcccatcatggttcaagttctacgccagggtacttacccccaa
ctactcgcccccatcacagacacccagatgtcagacatcagcacccagaccgacatcacc
ctccagcacatcgtggctctcaccaagctgcctcccacttcacccccgatgatggagctg
gaggagtatctgctgccggaagagtctcctccagagcacacttattttgaccccaacgat
tttctggagggcatccaacaggagatagagcgcgaggggcttgaatatgaggaggtggat
ctgtaccgagcaaacatccaagacaaactgggcctgaccatctgttacaggactgatgac
gaggatgaggccgggatctacattagtgagatcgatccaaacagcatcgctgcaaaggat
ggtagaattagagaaggggacaaaatcatacagatcaatggtgttgagatccaaaaccga
gaggatgcggtggcgctgttgaccactgagggcaaccagaacgtctctctgttggtggcc
cgaccagagattcagctggacgggggctggatggatgatgataggaacgacttcctggat
gacctccacatggacatgctggagcagcaacaccatcaggccatgcagttcactgccagc
gtgctggagcagaagaagcatgaggaggacgggggcaccacagacacggccacattgctc
tccaaccaccacgaaaaggacagcggtgttggccgcacagacgagagcacccggaacgat
gagagctctgagcaagagaacctcggtgacgatcagacgaccacagcttccaacacgctg
ggcagctgcaggaagctgacctatagccaggacacgctcggcagcactgacttgcccttc
agtggcgagtcgctcatctctgcagactacgccgacgccgacttcctgggcatcccagcc
gacgagtgtgagcgctttcgagagctcctggagctaaagtgtcagatgaggagtggcggc
gcgcagggcctgttcagcctagcttctgggggtcagacagaggaaggcgtggataaggag
ctggagttgctcaacgaggagctgcgcagcatcgagctggagtgcctgaacatcgtccgt
gcccacaagatgcagcagctgagggagcagtgccgagagtcgtggatgctccacaacagt
ggcttccacaactacaataccagcatagacgctcgccgccacgaactgccggacatcaca
gagctgcctgagaaatcagacaaggatagctcaagtgcctacaacaccggcgagagctgc
cgcagcacccctctcactctagaactgtccccagataactccctccgtcgtggagcaaag
aatcaggctgcagtcagactgtctggatctggagtcctaaatggcaagacacacaagccc
ctcttgtccccggtgcaggaagccggtggccccaggcggtgcagagtctcctctaaagac
ctggacagagaactacaagccgagagcaaagagaggaatcttggggagacgggtaagggt
ggacgaggctttcaaccacattccccttacaagcatgctcacatcccggcccacgcccag
cactaccaaagctacatgcaactgatccagcagaaatctgcagtggaatatgcccagagt
cagatgagtctggtcagcatgtgccgggatgcagtcagccccagtgaccatgagcccagg
atggagtggaaggtaaagatccgcagcgacggcacgcggtacatcacgaagcggccggtc
cgggacaggctgctgagggagcgtgccctccgtatccatgaagagcgcagcggcatgacc
acagacgatgacgccatcagcgaactaaagatgggtcgatactggagcaaggaggagcgg
aagcagcacgctatgcgggccaaggagcagaagcagcgccgcgagttcatgaagcagagc
cgagtggactgtctgaaggaccagagtgctccagaggacaagaaggagccaaacatcatc
gaactcagccacaaaaagatgatgaaaaagagaaataagaaaatttttgacaactggatg
accatccaggaactgctgacccacggcaccaagtcacctgatgggaccagggtttataac
tcacttctgtctgtgaccacggtgtga
DBGET
integrated database retrieval system
