Poeciliopsis prolifica (blackstripe livebearer): 129353657
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Entry
129353657 CDS
T09758
Symbol
xrn2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03008
Ribosome biogenesis in eukaryotes
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129353657 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
129353657 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129353657 (xrn2)
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129353657 (xrn2)
03009 Ribosome biogenesis [BR:
pprl03009
]
129353657 (xrn2)
03016 Transfer RNA biogenesis [BR:
pprl03016
]
129353657 (xrn2)
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129353657 (xrn2)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129353657 (xrn2)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Pre-60S particles
RNases
129353657 (xrn2)
Transfer RNA biogenesis [BR:
pprl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129353657 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
129353657
NCBI-ProteinID:
XP_054878999
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHSVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELTEEKNRMREEIIQRGGYLPPEEVKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLSNDPGWKNVAVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCXCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCSLCGQTGHEIKDCQGVARHKQGEHDEFAGAMPAAEQE
FIFIRLCVLREYLSRELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVSIYKDVVHKTGGYLTQNGFVNLERVEMIMQAVGVAEDNIFKKRKEDDVRQNFKRRN
KEKRKRMKAEQQGPAFMTSGQFAPQALGRRERPEPVHNARYQAYDMRMRSVEQHNKDAAQ
SLKSMMRNGGKSSAGVSDGTDRGVKRKCEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVD
VSDDSFRKKVVRSYVEGLCWVLRYYYQGCASWKWFFPFHYAPFASDFRDIQEMFSEFEKD
TKPFKPLEQLMGVFPAASGNFLPPTWRNLMMSADSSIIDFYPDDFAIDLNGKKYAWQGVA
LLPFVDERRLRAALADVYPDLTPDEVRRNSLGSDVLFLGRSHPLFDFIHELYRSETREEA
PVPAELCHGIXGTLNLDEDPILPDETVKSPVPLLRDISLNSAINVKFRDPQFSDGFVFKA
VLLPGAKMPSKVLKPEDYQRGARGPWRPQLGFNPNRQQAHLDQAGFRALGHSLPRAQQFR
GQYSNAAPPSSYHQGSYNRHSSSQQHFQHSRQNAPQRPPPSFSGVPPPFPRQQQPYRGGA
HSGAHGGGQGWDRALQAQQSAYQQNLSRGAVGPGGYQQRYDQRREDWGDRRSNRGQQQAR
GFPLPPPSRNIRWNN
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcttttttccgctggctgagccggaagtacccgtcgataatcgtccac
tctgtggaggagaaggggaaggagtgtaacggcgttcgcatcccggtggacacgaccaag
ccgaaccccaacgaggtggagtttgataacctgtacctggacatgaacgggatcatccac
ccgtgcacccaccctgaggacaagcccgctccaaagaatgaggatgagatgatggtggcc
atatttgagtacatcgaccgcctgttcaacatcgtgcggcccaggcgggttctctacatg
gccatcgacggagtggctcctcgggcaaaaatgaaccagcagcgctccaggcggttccgg
gcctccaaggagggggcggagctgacggaggagaagaaccgcatgagggaggagatcatc
cagagaggaggataccttccaccagaggaggtcaaggagcgattcgacagcaactgcatc
actcctggcacagagttcatggataacctggctcagtgtctgcgatactatgtggcggag
cggctcagcaacgacccgggatggaagaacgtggcggttttcctgtctgatgccagcgtt
ccaggggaaggagaacacaagatcatggatttcatcaggagacagagagctcagcccaac
cacgacccgaacacacaccattgcnnctgcggcgccgatgctgacctcatcatgctgggc
ctggccacccatgagccaaacttcaccatcatcagggaggagttcaagcccaacaagccg
cggccgtgttcgctgtgcggccagacgggccacgagatcaaggactgtcagggtgtggcg
cgccacaagcagggagagcacgatgagttcgccggcgccatgcctgcagccgagcaggag
ttcatcttcatcaggctctgcgtcctcagggagtacctgtccagagagctgaccatggcc
agcctgccgttccccttcgactttgagaggagtgtggatgactgggtcttcatgtgcttc
tttgtgggaaacgacttcctgcctcaccttccttccctggagatcagagagggcgccatc
gaccggctggtcagcatttacaaggacgtggtgcacaagaccggaggctatctgacacag
aacggattcgtgaacctggagcgggtggagatgatcatgcaggcggtgggcgtggccgag
gataacatcttcaagaagcgcaaagaggacgatgtgagacagaacttcaagaggagaaac
aaggagaaacggaagaggatgaaggccgagcagcagggtccggccttcatgacctcgggt
cagttcgccccccaggccctgggcaggagggagcgtcccgagccggtccacaacgctcgc
taccaggcctacgacatgaggatgcggtcggtcgagcagcacaacaaggatgcagctcag
tccctgaagtccatgatgaggaatggaggcaagtcgtctgcaggcgtgagcgacggcaca
gaccgaggagtcaaaaggaaatgtgaggacagcgatagcgagccggagcccgaagacaat
gtcaggctatgggaggacggctggaagcagaggtactacaagaccaagtttgacgtggat
gtgtccgacgacagctttaggaagaaggtggtgcgctcctacgtagaggggctgtgctgg
gtgctgcgctactactaccagggctgcgcctcctggaagtggttcttcccgttccactac
gctccgttcgcctccgacttcagagacatccaggaaatgttctcggagttcgagaaggac
accaagccgttcaagcctctggagcagctgatgggagtgtttcctgccgccagtgggaac
ttcctgccgcccacatggaggaacctgatgatgagcgcggattcctccatcatcgacttt
taccccgacgacttcgccatcgacctgaatgggaagaagtacgcctggcagggcgtggcg
ctgctgccgtttgtggacgagcggcgactgagagcggctctggccgacgtttaccccgac
ctgacgcccgacgaagtgcggaggaacagtctgggcagcgacgtcttgttcctgggcaga
tctcacccgctgttcgacttcatccatgagctgtaccgctcagagacccgggaggaggcg
ccggttccggcggagctctgccacggcatcncaggaacgctgaacctggacgaagacccc
atccttccagacgagacggtgaagtcgcccgttcctctgctgagagacatttcactcaac
agcgccatcaatgtgaagttcagggaccctcagttttctgacggcttcgtgttcaaggcg
gttctgctgccgggagccaagatgcccagcaaggtgctgaaaccagaggactatcagcgg
ggggcccggggcccctggaggccccagctgggcttcaaccccaacaggcagcaggcccac
ctggaccaggctggcttccgggcgcttggccacagcctgcccagagcccagcagttcaga
ggtcagtacagcaacgctgcaccgcccagcagctaccaccaggggagctacaaccgccac
agcagcagccagcagcacttccaacattccaggcagaacgcgccgcagcgtccgccgccg
tccttcagcggcgttccgccgccattccccaggcagcagcagccgtaccgcggcggggcc
cacagcggggcccacggcgggggccagggctgggaccgggccctccaggctcagcagtct
gcgtaccagcagaatctgagccgcggcgcggtgggacccggcggctaccagcagcgctac
gaccagcgccgagaagactggggagatcgccgtagcaaccggggccagcagcaggccaga
ggattccctcttcctcctccatccagaaatatccgctggaataactga
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