Poeciliopsis prolifica (blackstripe livebearer): 129353904
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Entry
129353904 CDS
T09758
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129353904 (col2a1b)
04518 Integrin signaling
129353904 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129353904 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129353904 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129353904 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
129353904
NCBI-ProteinID:
XP_054879328
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MLSFMDSRTVLLLVASQVCLLALVRCQLEDDQDDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPS
GSMGPRGPSGPPGKPGDDGEPGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGQKGAPGERGPP
GASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGFA
GSPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGPPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPIGPAGKDGSNGLPGPIGPPGPRGRTGDS
GPAGPPGNPGPPGLPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNPKPAKIPRKNWWSSKSKERKHVWFGDTMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTSNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCLRHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcttcatggattccaggactgtactgcttcttgtagcatcccaagtttgtcta
ttagcccttgtgagatgtcaactggaagatgaccaggacgatgcttctgcctgtagacac
gaaggacagctttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgcgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccgccacct
tttggaggaccaggagccaagggtcagaaaggtgaacccggagacattacagatgttgta
ggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgaggacca
agaggagaaaaaggagaaaaagggagccctggtcctcgtggcagagatggtgaacctggc
acccctggaaaccctggaccccctgggcctccaggacctaatggaccccctggacttggt
ggaaactttgctgctcagatggccggtggtttcgatgagaaggccggaggtgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctcagga
gcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggaccatct
ggctccatgggtccccgtggcccctccggtcctcctggaaaacccggagatgatggtgaa
ccagggaaaccagggaaaccaggtgaccgtgggcccaccggacctcagggagctcgtggt
ttcccaggaactcctggtctgccaggcatcaagggacacagaggttattcaggtcttgac
ggtgcaaagggagaaactggtgctgttggtgcaaagggtgaggctggtgctcccggcgag
agtggcgctcctggacccatgggaccacgtggtttgcctggggagagaggacgtcctgga
tccactggagctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcctcca
ggccctgttggtccagctggagctccaggcttccccggatctcctggtgcaaagggtgaa
gctggtcctactggcgcccgaggtcctgaaggagctcagggaccccgtggagagtcaggc
actcctggatcacctggaccctctggtgcttctggtaaccctggcactgacggtatccct
ggagctaaaggctcagcaggtgctccaggtatcgcaggtgctcctggcttccctggacct
cgcgggcctcctggacctcagggagcaactggacctcttgggccaaaaggaacatctgga
gatccaggtatccctggattcaagggtgaagctggaccaaagggagaaattggaccagct
ggacttcagggagccccgggccctcaaggagaagaaggcaagagaggacccagaggtgag
cctggtgctgctggacctcttggacctccaggagaaagaggagctcctggtaaccgtggt
ttccctggtcaggatggtctggctggtcaaaagggtgccccaggtgagcgcggaccccct
ggggccagcggtgccaagggggccacaggcgaccctggccgtccaggagagcctggtctt
cctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagttggg
ccttctggagctccaggtgaggacggacgtccaggaccccccggccctcagggagccaga
ggacagcctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggcaaa
tctggtgagaaaggactggccggagctcctggtctgagaggtcttcctggaaaagatgga
gaaacgggcgcggctggaccccctggccctgctggtcctgctggtgagagaggagagcaa
ggacagcctggtccctctggtttccagggtcttccaggacctcctggccctcccggtgag
ggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccactgga
cccagaggagagcgtggttttccaggagagagaggagctgctggaccgcaaggtttgcag
gggcccagaggtctgcctggaactcctggaactgacggacccaagggagccattgggcct
gccggaggtccaggagctcagggtccaccaggcctgcagggtatgccaggagagagagga
gctgctggcattcctggtcccaaaggagacagaggtgatgttggagagaaaggacctgaa
ggtgctcccggcaaagatggcgccagaggtcttactggtccaattggtcctcctggtcct
ggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggacctgcaggt
gttcgtggtgcacctggagacagaggagagacgggacctccggggcctgctgggtttgct
ggatctcctggagccgatggtcagcctggaaccaagggagagcagggagaagctggacag
aagggagatgctggagcccctggaccccaaggaccatccggtgcccctggccctgcgggt
cctacaggtgtttctggacctaaaggtgctcgaggtgcccagggtcctcctggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaacggtaaccctggacct
gcaggtcctgctggcccccctggtaaagacggaccaaaaggagtgagaggagacggtgga
cctccaggcagacagggtgatgctggactacgcggtcctgcaggacctccaggagagaag
ggcgaccctggagaggacggtcctcctggtccactaggtccctcaggtcctcagggattg
gctggacagcgcggtattgttggtctgcctggacagaggggggaaagaggtttccctggt
ttgcctggaccttctggtgagcctggaaagcagggagctgctggtggtcctggagaccgt
ggaccaccaggaccagtcggaccacctgggctcactggtccagctggagaacctggtaga
gagggcaatcctggatctgatggacctcctggtagagatggttctcctggaattaagggt
gaccgtggcaacaccggtcctgctggtgctcctggtgctccaggtgctcctggggctccc
ggcccagtcggtcccaccggaaaacagggagacagaggagagtctggagctcaaggacca
gctggacctccaggacctgctggtgccagaggaatgcctggaccccaaggaccccgtggt
gataagggtgaagctggagagtctggtgagagaggacagaagggtcacagaggtttcact
ggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactggacct
gctgggccttctggacaaagaggaccacctggacctattggtcctgctggaaaagacggg
tcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgtactggagactct
ggtcccgcaggtcctcctggaaaccctggaccccctggacttcctggtccccccggtcct
ggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgaccccctg
aggtacatgagagcagaccaggctgctgggaatctccgtcaacatgacgcagaggtcgat
gccactctcaagtccctcaacaaccagattgagaacatccgcagcccagagggatccaag
aagaatcctgcccgcacctgcagagacctgaagctctgccaccccgactggaagagcggt
gagtactggattgatccaaatcaaggctgcactgtagatgcaatcaaagttttctgcaac
atggaaaccggggagtcctgtgtgaaccccaaacctgccaagatccctcgcaagaactgg
tggtccagcaagagcaaagaacgcaaacatgtgtggttcggagacacaatgaacggagga
ttccatttcagttatggtgacgacagcctggcacccaacactgcctccattcagatgact
ttcctgaggttgctgtcgacagaggcttcccaaaatctcacttaccactgtaagaacagc
gtggcctacatggatgcttcaacaagcaacctgaagaaggccgtcctgctgcaaggctcc
aacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaagac
ggctgcttgagacacacaggacagtggggtaagacagtgttcgaatacaggtcgcagaag
acctcccgtctgcccatcgtggacattgcccccatggatattggtggtgcagaccaggag
tttggagttgacattgggccagtttgcttcttgtaa
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