Poeciliopsis prolifica (blackstripe livebearer): 129354182
Help
Entry
129354182 CDS
T09758
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129354182 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129354182 (skic2)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129354182 (skic2)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129354182 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
129354182 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
NirdL-like_HTH
Motif
Other DBs
NCBI-GeneID:
129354182
NCBI-ProteinID:
XP_054879676
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRIYVPPVGPTDLPLSLLEMGRSGRFELITHPLPDQLLPPQSTLPHGLPPTSLDLDREV
EKRFLQDPAWLPIHDTDFAFQKFLKVTERKVNVDSLLSCAPTPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTRSEQE
EEIDFEKDLLKIPPGLKAGMDFSDKVAKIAKPEVNLMSLLSTLEDIPDLQPEAEEKENDK
AGQEAVKLPRTNSLEDLGIKDAESSRSQTEAGKTDKSKPKENPEEKKKWAIPVDILSPCE
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAAGNFLTKGYYTAVDTKKERTSKHAQ
SFGTKSTPQHTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKSGVHEMADLHAMMMGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQTHEKRISHLKQMLASLPPLETEGQLSDILPYYHTATEMQNTRQTLQKAVLESVNGL
KALSVGRVVIVNNKQHLNALGVILQVSNDAVNRTFTALIICEKGNEEVDGKAEDNAAFQH
MYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVISDRIIDNYNKRQQPRFRADPPGQA
ISTATQELLRLAEANPGGVATLDPVNDLQLKSVDVVEASMRLRMLQDSLRDFNCVHSPTF
PEQFARIKERMSVQEELDRLLFLVSDQSLMLLPEYHQRIKVLQSLQYIDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQTEPHITSTLKESIERVLS
VAQRIGQLQRECGIAQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatatatgtaccccctgtcggccccacggacctgccactgtccctgctggag
atgggacgctcgggaaggtttgagctcatcacacaccccctgcctgaccagcttttgcct
ccccagagcacgcttccccacggactcccacccaccagcttggacctggacagagaagtg
gagaaacggtttctgcaggatccagcctggctgcccatccatgacacagactttgccttt
cagaagtttctcaaggtgactgaaaggaaggttaatgtcgactctttgctaagctgcgcc
ccgactccgcttcactctgggctctcagtggtcagagatccaaccacagggatgctgctg
gacttcacagaggttttacttgaaaacactggcctgtcggccaaaaactcgctgtcactg
cagcgtcagcctgggcctccttctgaaagccttcggggaagcaacactaactaccccttc
cttcccggaggaatggaggaactcactctggaccaaattaagacgagatctgagcaggag
gaggaaatagactttgagaaagatttactaaaaatccctcctggactcaaagctgggatg
gatttctctgacaaagttgccaaaatagcaaaaccagaggtgaacctcatgtccctgctg
tccacactggaagacattcctgatcttcagcctgaagccgaggagaaggagaatgacaaa
gcaggacaagaggctgtcaaacttccccggactaacagcctggaagacctgggaataaag
gatgcagagtcttcccgttcccaaacagaggcaggaaaaacagacaagtcaaagccaaaa
gagaacccagaggagaaaaagaaatgggccatccctgtggacattttgtctccctgcgag
gatttctacaagcgcatcccaaacccggcgttcaagtggccctttgagttggacactttc
cagaagcaggctgtgctgaggctggaggcccacgactccgtttttgtagccgctcacacg
tcggccggcaaaacggtggtggctgagtacgccatcgctctgtcccagaaacacatgaca
aggaccatctacacgtctcccatcaaagctctgtccaatcagaaattcagagactttaaa
accacttttggggacgtcggactcctgacaggagacgtccagctcagtcccgagtcttcc
tgtctcatcatgaccacagagatcctcaggtcgatgctgtacaacgggtcagaggtcatc
agagacctggagtgggtcatcttcgacgaggtccactacattaatgatgcagagagaggg
gtggtttgggaggaagtgctgatcatgcttcctgatcacgtcagcatcatcctgctcagc
gccacggtgccgaatgctctggagttcagcgagtggatcggtcgtattaagaagaggcac
atttacgtgatcagcaccatgaagcggcccgtacctttggagcattatctgtacacggga
aacagcaccaagacccagaaggagatgttcctgctggtggacgctgcaggaaacttcctc
accaaaggctactataccgctgtcgatacaaagaaggaacggaccagtaaacacgcccag
tcgttcggcacaaagagcacgcctcagcacacctcagccagccaggaccgagcggtgtgg
ctcacgctgctccacttcctgtcccagcggcagcagacccccgtggtggccttcaccttc
tctcggacgcgatgtgacgagaacgcccgctcgctggactccatggacctcaccacctcc
atagagaaggcggagatccactccttcttccagaagagcctcagtcggctgcgaggagga
gaccggcagctgccgcagatcttgctcatgcgggaccttctgaagagaggcatcgccgtc
catcacagcgggatcctcccgatcctgaaggaggtcatcgagatgcttttctcccgaggt
ctcgtaaaggtgctgttcgccacagagacgtttgcgatgggagtgaacatgcccgccagg
accgtggtgttcgacagcatcaggaaacacgacggcaccggcttcaggaacctgctgcca
ggcgaatacattcagatggcgggaagagcaggaaggagaggcctggacgccacaggaaca
gtcatcattttgtgtaaatcgggcgttcatgagatggccgatctgcacgccatgatgatg
ggaaagcccaccatcctccagtcccagttcagactgacctacaccatgatcctgaacctg
ctgcgggtcgaagcgctccgagtgaccgacatgatgaggaggagcttctctgaaagccac
agagacactcagacacatgagaagaggatcagccatctgaagcagatgctggcgtctctt
cctcctctagagacggagggccagctctctgacattttgccttattatcatacagcaacg
gagatgcaaaacaccagacaaaccctgcagaaagccgtcctggagtctgtgaacggactc
aaagcgctgtctgttggtcgagttgtcatcgtcaacaacaagcagcatcttaatgcgctg
ggagttattctacaggtgtccaatgacgctgtgaatcgcaccttcacggcgctcatcatc
tgtgagaaggggaacgaggaagtggacggaaaggctgaggacaacgccgctttccagcac
atgtacaacacagctctgttcatccctgaaggtccatgcagccacacggtgcagaagtta
aaacttcaggacatatccgccatcaccgtgaaaaccctcaaagtgatttccgacagaata
atcgataactacaacaagaggcaacagccgcggttcagggccgaccctcccggccaggcc
atctccacggcgacgcaggagctgctgcgcctggccgaggcgaacccgggcggcgtggcc
accctggacccggtgaatgacctccagttgaagagcgtggacgtggtggaggcctccatg
aggctccgcatgcttcaggacagcctgcgggacttcaactgcgtccactcgcccaccttc
cccgagcagtttgctcgtattaaggagaggatgagcgttcaggaggagctggaccggctt
ctgttcctggtttcggaccagtccctgatgctgctgcccgaataccaccagaggatcaag
gttcttcagtcgctgcagtacatcgacagcagcggcgcggtgcagctgaaaggccgagtg
gcctgtcagatcagcagccatgagctgcttctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaagagagcgccgccctgctgtcctgcctggtcttcacccagaac
acgcagacggagccgcacatcaccagcactctgaaggagagcatcgagcgcgtgctgtcg
gtggcccagcgaatcgggcagctgcagcgggagtgtgggatagcgcagacggccgaggag
tttgtaggccagttcaagttcggcttgacggaggtggtgtactgttgggccagaggcatg
ccgttcgctgagatcgcgcagctcacagacgtgcaggaaggcacggtggtccgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcggcaggcggcccgcatcgtgggagactcc
gtcctgggcagcaagatggagaaagcctcgttggccatccgcagggacatcgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
