Poeciliopsis prolifica (blackstripe livebearer): 129354344
Help
Entry
129354344 CDS
T09758
Name
(RefSeq) exosome complex component RRP40-like
KO
K03681
exosome complex component RRP40
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129354344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129354344
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129354344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP40_S1
KH_6
RRP40_N_mamm
Rrp40_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
129354344
NCBI-ProteinID:
XP_054879818
LinkDB
All DBs
Position
Unknown
AA seq
244 aa
AA seq
DB search
MFSVLKERVGEILLPGDEFCCGPQDTLPLTDSGKAGRLVAGPGLRRSGDRLLVSRSGVLR
HKEPNKFWIESQQRRYVPAKGETVIGIVTTKSGDVFKVDIGGSELASLSFLAFEGATKRN
RPNVQVGDLLLAQLVVANKDMEPELVCIDGSGRANGMGVLGTGGLLIKVSLGLVRRLLAP
RSDLRADLEQLFPCELTVGMNGRVWVRAGAVQQTLVLANLLQSCDAMTAAQRQQLFRRLQ
QGAF
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgttctcggttctgaaggagcgggtcggggagattctgcttcccggagatgagttctgc
tgcggcccccaagacaccctccctcttacggacagcgggaaggcaggacggctggtggcc
gggccggggctgcggcggagcggtgaccgtctgttggtgagccggagcggcgtgctgaga
cacaaagagcccaacaagttctggatcgagtcccagcagaggaggtatgtcccagccaaa
ggagagacggtgattggcattgtcacaacaaagtccggcgacgttttcaaagtggacata
ggaggaagtgagttggcatctctgtccttcctggcctttgagggcgccaccaagagaaat
cgacccaacgtccaggtgggcgatctgctgctggcccagttggtcgtggccaataaggac
atggagccggagctggtctgcatcgacgggtcgggccgagccaacgggatgggcgtgtta
ggaactggagggctgctcatcaaggtgtctctgggcctggtccgaaggctcctggctccc
cgcagcgacctccgggccgacctggagcagctgttcccctgcgagctgacggtggggatg
aacggccgggtctgggtccgggccggcgccgtccagcagactctggttctggccaacctg
ctgcagagctgcgacgccatgacggcggcgcagcgccagcagctgttccggcgcctccag
cagggggcgttctga
DBGET
integrated database retrieval system
