Poeciliopsis prolifica (blackstripe livebearer): 129354452
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Entry
129354452 CDS
T09758
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pprl01009
]
129354452
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129354452
04131 Membrane trafficking [BR:
pprl04131
]
129354452
03036 Chromosome and associated proteins [BR:
pprl03036
]
129354452
Enzymes [BR:
pprl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
129354452
Protein phosphatases and associated proteins [BR:
pprl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129354452
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
129354452
Membrane trafficking [BR:
pprl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129354452
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
129354452
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
129354452
NCBI-ProteinID:
XP_054879887
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MASGSDPPGSGVKSVRRSPRLSPQAGGGVSLQEVKRRGRMERSREEEDLSGRLKTLDLCS
RSAASGTGLVYSQIFTHHQNLWDTSHVESPDRVTAIMSELQRKELLSRCFTVEPREATEE
ELLLAHTKIYVDTMKATRTMTQTELQSLSDRYDSVYLHPESFQVCVTAVGSVLQLVDRVL
TSEVRNGFAVIRPPGHHAQADQPNGFCVFNNMAVAARYAQKRHAVNRVLIVDWDVHHGQG
IQYLFQEDPSVLYFSIHRYEGGAFWPHLQESNSSFVGSGRAEGRNINLPWNKTGMSNADY
IIAFQQVLLPVACEFQPQLVLVSAGFDAAAGDPKGEMCVHPQCFHILTHMLMSLAEGRLV
LALEGGYDLQATAEGVAACVTALLGGACPLLDPPTAPCDSALQSISETISALYPHWASLQ
VLAGPGPEERFITAAANHSSPTPATINTRFAMTTGLVYDEKMMEHENLWDRHHPEQPQRI
SKIFSKHQKQGLVARCHRIPARLATEEELALCHSLQHIEQMKATAEMKPRDLHRLGNQFT
SIFFSNHSFQCAQLAAGSCFNAVDAILSGQLSNGVAIVRPPGHHAERDAPSGFCLFNTAA
LAARYAQKNSHDPQLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHRYDSGTFFPFSEDA
AADRVGVAKGAGFNVNVAWSGGRMGDSDYLAAFHHVVMPIAAEFNPGLVLVSAGFDAARG
DPLGGYQVTPEGYAHLTHLLMSLAGGRVLIILEGGYNLTSISDSMAMCTSVLLGDAPPSL
TTPFPPPHHCAVATIREVIRQHAPYWRSLRITVPESVQLALPAPKHRGKRSSLGRKSDKR
PLPPAGQEGATMQGVEQLTQGLASLDITQXPPSPQEPPTMEVKGDVESELENSQSAESMQ
TQVMLPAAAESDRKEGGSGEGAELTSEGTCGWSTPQVSLELTCSTEMGGDALYVVDPLPW
CPHLDAVKPXPPSGVDVFQPCGDCGSDAENWICLTCYQVCCGRYVNEHMVTHGAVSEHPV
VLSFSDLSVWCYLCESYVHHQVLFEAKNAAHFAKFGEEVPPWS
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggatcggatcctccaggatccggagtgaaatcagtcaggaggtctccacgc
ctgtcacctcaggctggcggaggagtcagcctccaggaggtgaagaggcgaggacggatg
gagaggagcagagaggaagaggatctgagtggacggctgaaaacgctggatctgtgcagc
aggtctgcagccagcggaaccggactggtttactcccagatcttcacgcaccaccagaac
ctctgggataccagccatgtggagagtccagacagagtgacagccatcatgtcagagctg
cagaggaaggagctgctgagccgctgcttcaccgtggagcccagagaagcaacagaggag
gagctgttgctggctcacacgaagatttatgtggacaccatgaaggcgactcggacgatg
acgcagacggagctgcagagtctgtctgacagatacgactcagtctacctccaccctgag
tccttccaggtttgtgtgacggctgttggttcagtcctccagctagtggatcgggtcctg
acctctgaagtcaggaatggattcgccgtcatcagacctccaggtcatcacgctcaggcc
gaccagcccaacggcttctgtgtgttcaacaacatggcggtcgcggctcggtacgctcaa
aaacgccacgccgtcaacagggttctgatcgtggactgggacgtccatcatggtcagggc
atccagtacctgttccaggaggatcccagtgtgttgtacttcagcatccacaggtatgag
ggcggagccttctggcctcacctgcaggagtcaaactccagctttgtgggcagcgggcga
gctgaagggaggaacatcaacctgccctggaacaagaccgggatgagcaacgctgattat
atcatcgccttccagcaggtgctgctgccggtggcctgtgagttccagcctcagctggtt
ctggtctcagctggatttgatgctgcagccggagatccaaagggggagatgtgtgtgcac
cctcagtgtttccacattctgacccacatgttgatgagtttggctgaaggtcggctcgtt
ctcgctctcgagggaggttatgaccttcaggcaacagcagagggcgtcgcagcctgcgtc
acagctctgctgggcggagcctgtcctctgctggacccgcccactgctccctgtgacagt
gccttgcagtccatctctgagaccatctcagcgctgtacccacactgggcctcgctccag
gtcctggctggacctggtccggaggagcgtttcatcacagctgcagccaatcacagcagc
ccaacaccggctaccatcaatacacgttttgccatgacaacaggtctggtttatgatgag
aagatgatggagcatgagaacctgtgggacaggcatcaccccgaacagcctcagaggatt
tctaagatcttctccaaacatcagaagcagggattggtcgcccgttgccatcggatacca
gcccgcctggcgacagaggaggagctggccttgtgtcacagcctgcagcacatcgagcag
atgaaggcgacggcggagatgaaaccccgcgaccttcacagactgggaaaccagttcacc
tccatcttcttcagcaaccacagcttccagtgcgcccagttagctgctgggagctgcttc
aacgcagtggacgccatcctgagcggccagctgagtaacggcgtggccatcgtccgccct
ccgggtcaccacgccgagagagacgctcccagcggtttctgtctcttcaacaccgccgct
ctcgccgctcgctacgcccagaaaaactcccatgatcctcagctgcgagtgctgatcctc
gactgggacgttcaccatggcaacgggacacagcacatgtttgaagacgacgacagcgtt
ctgtacgtctctctccatcgctatgacagcgggacattcttcccattctcggaggacgcc
gccgccgacagggtgggcgtggccaagggggcgggctttaacgtgaacgtagcgtggagc
ggcgggcgaatgggcgactccgattacctggcagcatttcatcatgttgtcatgccgatc
gcggccgagtttaaccccggactggttctggtgtcggccgggttcgacgcggcccgggga
gatccgctgggcggataccaggtgactcctgagggatacgcccacctcacgcacctgctg
atgtcactggctggggggcgtgtcctcatcatcctagagggcggttacaacctgacgtcc
atctctgactccatggcgatgtgcaccagcgtgttgctaggagacgctcccccatcccta
acaacacccttccctcccccccatcactgcgccgtggcaaccatcagggaagtcatccga
caacacgccccctactggcgctccttgaggattactgttccggagtcggtgcagttggcc
ctccccgccccaaagcatcgtgggaaacgtagttctctaggcaggaagtcagacaaacgg
ccgctgccccctgctggacaggagggtgctacgatgcagggtgtggagcagctgactcag
ggattggccagtcttgatatcactcaangcccgccctccccacaggaaccgcccacaatg
gaggtcaaaggtgatgtggagtctgagttggagaacagccaatcagcagagagcatgcag
actcaggtgatgttaccagcagcagcagagtcagaccgtaaagaaggcgggtcaggcgaa
ggggcggaacttacgtcagaaggaacctgtggttggtcgacgcctcaggtgtctctggag
ctgacgtgcagcactgagatgggcggagacgctctgtacgtggtggaccctctgccctgg
tgtcctcacctggatgctgttaagcccncccccccctcgggagttgatgtcttccagcct
tgcggcgactgcggttctgacgccgagaactggatctgcctcacctgctatcaggtgtgc
tgcggtcgctacgttaacgagcacatggtgacgcacggcgccgtgtcagagcaccccgtg
gtgctcagcttctctgatttgtccgtttggtgctacctgtgtgagtcctacgtccaccac
caggttctgttcgaggccaagaacgctgctcacttcgccaagtttggagaggaagttcct
ccctggagctga
DBGET
integrated database retrieval system
