Poeciliopsis prolifica (blackstripe livebearer): 129354527
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Entry
129354527 CDS
T09758
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129354527 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129354527 (cpsf3)
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129354527 (cpsf3)
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129354527 (cpsf3)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129354527 (cpsf3)
U7-dependent histone pre-mRNA processing factors
129354527 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
129354527
NCBI-ProteinID:
XP_054879981
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MTVNMAAKRKADAAVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEG
MDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD
YVKVSNISADDMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEI
AGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDI
VNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAM
NDKIRKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRR
NGVIIAGYCVEGTLAKHIMTEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRAL
KPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLTFRGEKLAKVMGA
LADKKCAQGQRVSGILVKRNFNYHIMTPADLSNYTDLSVGMVTQSQAIPFTGPISLLVSQ
LRNLAGDVQQMEKTEKITVKIFESITLVHEAGMVLLEWVANPLNDMYADAVATVVLEVQS
NPNAQKFLDSRKETLDMEVFVERLELMMHDMFGDDCVNFKDSRNLFVTVDGATATIDPET
RAVTCPNDEPLREMIEVAIHRLFEALTPVF
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgacggtaaacatggcggcgaagcgaaaagcggacgcggcggttcctgcggaggaaagc
gaccagctgctgatccgcccgctaggagccggtcaggaagttggacggtcctgcatcatc
ctggagttcaaaggcagaaaaatcatgctggactgtgggatccatcctggtctggagggg
atggacgctctgccctacatcgacctgattgacccggctgagatcgacctgctgctcatc
agccacttccacttggaccactgtggagcgcttccctggttcctgcagaagaccagcttt
aagggacgtacttttatgacgcacgccaccaaggccatctaccgctggctcctgtctgac
tacgtcaaagtcagcaacatctctgcggacgacatgctgtacaccgagaccgacctggag
gacagcatggagaagatcgaaaccatcaacttccacgaggtgaaagaagtggcgggcatc
aagttctggtgttaccacgccggccacgttctgggcgccgccatgttcatgattgagatc
gccggcgtcaagctgctgtacaccggggacttctcccggcaggaggacagacacctgatg
gcggcggagattcccagcgtgaagccagacatcctcatcacagagtcgacgtacggcacc
cacatccatgagaaacgggaggagagagaggcccggttctgcaacacggtgcacgacatc
gtgaaccgcgagggccgctgcctgatccccgtgttcgccttggggcgagcccaggagctg
ctgctcatcctggacgagtactggcagaaccacccggagctgcacgacattcccatctac
tacgcctcgtctctggccaggaagtgcatggccgtctaccagacctacatcaacgccatg
aacgacaagatccgcaaggccatcaacgtcaacaaccccttcgtcttcaagcacatcagc
aacctgaagagcatggatcattttgacgacatcggccccagcgtggtgatggcgtcgcct
ggtatgatgcagagcggactctccagagagctgtttgagagctggtgcactgacaggagg
aacggcgtcatcatcgctgggtactgcgtggagggaacgctggccaagcacatcatgact
gaaccagaggagatcaccaccatgtcgggtcagaagcttcctctgaagatgtctgtggac
tacatctccttctcggctcacaccgactaccagcagaccagcgagttcatcagagctctc
aaacctccccacgtgattctggtccatggagagcagaacgagatggcccgactgaaggcg
gctctgatccgggagtatgaggacaatgatgaggtccacatcgaggtccacaacccgagg
aacaccgaggccgtaacgctcaccttcagaggagagaagctggcgaaggtgatgggtgcg
ctcgcagacaagaagtgcgctcagggccagagggtctccgggatcctggtcaagaggaac
ttcaactaccacatcatgaccccagctgacctttccaactacacggatctgtccgttggc
atggtgacccagtctcaggccatcccgttcaccggacccatctccctgctggtgagccag
ctgagaaacctggcaggtgacgtgcagcagatggagaaaacggagaaaatcacagtgaag
atcttcgaaagcatcacgctggttcacgaagccggcatggtgctgctggagtgggtcgcc
aacccgctcaacgacatgtacgcagacgccgtcgccactgtggttctggaggtccagtcc
aatcccaacgcccagaagttcctggacagcaggaaggagaccttggacatggaggtgttt
gtggagcgtctggagctcatgatgcatgacatgttcggggacgactgcgtgaatttcaaa
gacagcaggaatttgtttgtgacggtggacggcgccacggcaacaatcgacccggagacg
agagcggtgacgtgtccgaacgacgagcctctgagggaaatgatcgaagtcgccatccat
cgtctcttcgaggcgctcacgccggtcttctga
DBGET
integrated database retrieval system
