Poeciliopsis prolifica (blackstripe livebearer): 129354882
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Entry
129354882 CDS
T09758
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03020
RNA polymerase
pprl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129354882 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
129354882 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129354882 (polr2a)
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129354882 (polr2a)
Enzymes [BR:
pprl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129354882 (polr2a)
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129354882 (polr2a)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129354882 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129354882
NCBI-ProteinID:
XP_054880396
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILAKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcggttactgaagggggtatcaaa
taccccgaaaccacagaaggaggacgtcctaagcttggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgtccg
ggccacttcggacacatagagctggcgaagccggttttccacgtcggcttcatatcaaag
ataatgaagattcttcgatgcgtctgcttcttttgctcaaaactgttggtggattctaac
aacccaaagatcaaagaaatccttgcgaaatccaagggccagccaaggaagcgtctgacc
catgtctacgagttgtgcaaaggtaaaaacatatgtgagggaggggaagagatggacaac
aaatttggaatggagccacaggagacggaggaggacattaccaaggagaagggtcacggc
ggctgcgggcgctaccagccacgcatccgacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcccaggagaagaaaatcctgctgagtcccgaacgcgtgcac
gagatctttaagcgcatctcggacgaagaagacatcatcttgggcatggaccccaagttc
gcccgtccagaatggatgattgtgaccgtgctgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcagggctcagctcgcaaccaggacgatttgacccacaagctggcggac
atcgtgaagatcaacaaccagctgagaagaaacgagcaaagtggtgcagctgctcacgtc
atcgcagaggatgtgaagctccttcagtttcacgtggccacgatggtcgacaacgaatta
ccaggcctgccgagggcaatgcaaaaatctggccgccctctcaaatccataaagcagcgt
ctaaagggaaaagaggggcgagtgaggggtaatctgatgggcaaacgcgtggacttctcg
gcccgaaccgtcatcactcctgatcccaacctgcagatcgaccaagtgggcgtgccacgg
tccatcgcggccaacatgacgttccccgagattgtcacaccctttaatattgacagattg
caagagttggtccggagaggcaacagccagtaccctggagcaaagtacattatccgagac
aacggagatagaatcgacctgcgattccaccctaaaccaagtgaccttcatctgcaaatc
ggctacaaggtggaaaggcacatgtgcgacggtgacatcatcatcttcaaccgacagccc
acactacataaaatgtccatgatggggcacagagttcggatcctgccctggtcgacgttc
cgactcaacctcagtgtcaccaccccttacaatgctgacttcgacggggacgagatgaac
ctccacctccctcagtcgctggagacgagggcggagattcaggagctggccatggtgccg
cggatgatcgtcacgccccagtccaaccggcccgtcatgggtatcgtgcaggacaccctc
acagccgttcgcaagttcactaagagagacgtgttcttggagaggggtgaagtgatgaac
ctcctgatgttcctgtccacctgggacgggaagatgcctcagccggctattctcaaaccc
cgcccgctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacccacagcacgcaccccgacgacgaagacagcggcccctacaaacacatctct
cctggtgacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctggggacctcggctggctcccttgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattccattggtattggagactccattgctgatgccaagacgtacctcgacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaaccgacacccggtaacaccttgaggcaaaccttcgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcctctgctcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggcaggatccaagggctcaaagatcaacatctca
caggttatcgccgtggtgggccagcagaacgtggagggtaagcgaatccccttcgggttc
aagcaccgcacgctgcctcacttcatcaaggatgactacggccctgagagcagaggcttc
gtggagaactcctacctggctgggctgacgccaaccgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagaccgctgagacgggttacattcagcgt
cggctgatcaaatccatggagtctgtgatggtgaagtacgacgccacggtgcgaaactcc
atcaaccaggtggttcagctgcgttatggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacctggcgacgttgaagccctcccacaaggcgttcgaaaagaagtttcggttt
gactgcaccaacgagcgcgcgttgagaagggtgctgcaggaagacgtggtgaaggacgtg
ctgactaatgcacacgtgcagagcgtcttggagaaggagtttgagaagatgagggaggac
agggagatcctgcgggcgattttccccactggtgacagtaaggtggtattgccgtgcaac
ctggccagaatgatctggaacgcgcagaagattttccgaatcaacactcgaaccccaaca
gacctaaatcccctgcgagtggttgagggcgttcaggagctcagtaagaagctgattatt
gtcaatggcgacgatcctctgagcaggcaggcccaggaaaacgccactctgctcttcaac
atccacctgcgatcgacgctctgctccaaacgcatgacggaggagttccgcctgtccacc
gaggcttacgactggctgctgggagagatagagaccaagttcaaccaatccattgcccat
cctggtgaaatggtcggcgctctcgctgcccagtcgctgggagagccggccactcagatg
accctgaacactttccactacgccggtgtgtcagccaagaacgtcacgctcggtgtgcct
cgtctcaaagagttgatcaacatctcgaagaggcccaagacgccgtcactgaccgtcttc
ctgctgggtcaggcggcacgtgacgcggagagagctaaggacatcctgtgtcgactggag
catacaacgctcaggaaggtgactgccaacaccgccatctactacgaccccaaccctcag
aacacagtggtggccgaggatcaggagtgggtgaacgtctactacgagatgccggacttt
gatgtgactcgcatttccccgtggctgctgcgcatcgagctcgaccgcaagcacatgact
gaccgcaaactgaccatggagcagatcgcagagaagatcaatgcaggtttcggtgacgac
cttaactgcatcttcaacgatgacaacgctgaaaaactggtgctgcgaattcgaatcatg
aatagcgacgagaacaaatttcaagaggacgaggaggttgtggacaaaatggacgacgat
gtgtttctgaggtgcatcgagtccaatatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcatctgcctcagaccgataacaagaagaagatcatcatc
acagaggatggagagttcaaggccctgcaggagtggatccttgagacggacggtgtgagc
ctcatgagggtgctcagtgagaaggacgtggatcctgtcaggaccacctccaacgacatc
gtggagatcttcacggttttgggtatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctcctttgatggctcctacgtcaactaccgccacttggctctgctttgt
gacactatgacctgccgcggtcatctgatggccatcacgcgtcacggcatcaaccgtcaa
gacaccggacctctcatgaagtgttcctttgaggagacggtggatgtcctgatggaggca
tcctctcacggagagtgcgacccgatgaagggcgtgtcggagaacatcatgctcggccag
ctcgccccagcagggaccggctgctttgacctgctgctagatgctgagaagtgcaagtac
ggcatggagatcccgacaaacattcccggcatcagcgtggcagggcccactggaatgttc
tttggctcggtgccgagccccatgagcggtatgtctcctgccatgacaccctggaacacc
ggagccacccccgcctacggagcatggtcccccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcatcggatgcgagcggcttctctccaggttactcc
ccagcctggtctcccacaccgggatcaccagggtctcctggaccagtcagtccatacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctctcctgcctacgagcct
cgctctccggggggctacacccctcagagcccaggctactccccaacgtcgccttcctac
tcccccacctctccctcttattcccccaccagccccaactacagccccacgtctccatcg
tactcccccacttcacccagttactccccaacgtctccctcctactctccaacgtctccg
tcttactccccgacatctccctcctactcccccacttctccctcgtactctccgacgtct
ccgtcatattctccgacctctccgagctacagcccaacatcgccgagctacagcccgaca
tcgcccagctactcccctacttcaccctcctactcgccaacctcaccctcttactctccc
acttctccatcctactcccccacctctccttcctactcccctacctctccgtcctactct
ccaaccagtccgagctacagccccacatcgccgaactacaccccaacatcccccagttac
tctcctacctccccttcatactctcccacatcgccctcttactccccaacctctcccaac
tacacaccaaccagtccaaactactccccaacttcaccctcttattcccctacatctcca
tcctactccccctccagtccacgctacacccctcagtcgcccacttacacacccagctcg
ccgtcgtacagccccagctctccttcatattccccaacctcgcccaaatacaccccgacg
tccccctcttacagccccagctctccggagtacacccccacctctccaaaatactcccca
acgtcgccgaagtactcgcctacatcaccgaagtactcccccacctcccctacctactcc
ccaacaactccaaaatacagccccacatccccaacctactctcctacctcccccacctac
acccctaccagccccaaatactctcccacctctcccacttactccccaacttcgcccaag
tattcacccacgtctccgacgtactcgcctactagccccaaaggctccacctacagcccc
acttcccccggctacagccccacctcccctacctacagcccggccatcagccccgacgac
agtgacgaggaaaacaactga
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integrated database retrieval system
