Poeciliopsis prolifica (blackstripe livebearer): 129355582
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Entry
129355582 CDS
T09758
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129355582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129355582
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129355582
mRNA degradation factors
5'-3' decay
Decapping complex
129355582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
129355582
NCBI-ProteinID:
XP_054881152
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GARRGQGGGDSSPGPAXSTAVGRHPPLGFSSSSSGLPGHDERSGGGDLAESLARFILDAD
PAIAGVGAAERRGPAPGSAGPVLSALRGPDQPRVLQQPACIPPKHQLPPGPPASGLPASS
VLSYQQQQHLLRRGAAPMGQMNSHSIWDNSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGL
PKRPPQGRSDEGHDLSERAPPPPPSSSPVIGSPPVRAVPIGTPPKHPMSLNHQVHHPTAV
HVRAPVQHRYPAPFPERLSPNTLLNMANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGF
PRGGPGPPLLAGAGFRPFFGGPPPPHGHRMGPPPPHGPPNHTAPIRHNTTHLHPQHRRML
XQRMQSRGGDRVRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYY
EKMEKRQEKERDSSRKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDA
VVTTRSDDEEKREKQVWNKRRQVLYTVEKMYSLLLEVQDFEKRFVQTPEEDRDALLEQHK
SNTEQLSNSLQDGDWEDRVSDEQCVMILSVRKGKRLVSRLLPLLPGAQAAGVVMVIARNL
PALAKKDKQDQALCCLVEPVSAVIQSLSSSALTDLLQELQGGEGQLAAALQNKFGVTLLF
LILSEGERMQSSDPNCELMDDNRWTELVFSVTRELLGVPSSSLAPPLFTPPNLLSLFSRY
VDRQRLELLQDKLQISASSR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgacgactgtactctggaggaagaggatgatgggctg
attgaggaggaagatgagatcgatcagtttaatgacgacacgtttggagccggcgccatc
gatgacgactggcaggaggagcacaagcgcctggcggagctggacgagcgggacgggctg
ggcgccaggcggggccaggggggcggagactcctccccgggccccgccncctccaccgcc
gtgggtcggcaccctccgctcggcttctcttcgtcttcctctggactgccgggtcacgac
gagcgatcgggaggcggcgacctggccgagtctctggcccgcttcattctggacgccgac
ccggccatcgccggcgtcggagcggcagagaggcgcgggccggcccccgggtcggccggg
ccggttctgtccgcgctgcggggcccggaccagcccagagtcctgcagcagcccgcctgc
atcccccccaaacaccagctgccccccggaccccccgcctcaggcctacccgcctcctcc
gtgctcagctaccagcagcagcagcacctcctgcgcagaggagccgctcccatgggccag
atgaactctcacagcatctgggacaacagcatgggcttcgggccggtcagcgtcacgccg
ggactcgtcacacacatggaggacagtccactgatgtccatcatcaaggaggtggggcta
ccgaagcgccctcctcaggggaggagcgatgaaggtcacgacctgtcagagagagccccg
cccccccccccctcctcctcccctgtgattggctctcctccggtgagggcggtgcctatc
gggacgccgcccaaacacccgatgagcctgaaccaccaggtccaccaccccacggcggtc
catgtgcgagccccggtccagcaccggtacccggctccgttccctgagcgcctctccccc
aacacgctgctcaacatggccaattctccgttgtgtcgcggtccgttccctcccagagtc
ggtccggttctgtctcagctccaacgggctcagctgctcaactcccaggtggcaggtttt
cctcgcggcggccccggccctcccctgctggccggcgccgggttcaggcccttcttcggg
ggcccccctcctcctcacggccacaggatgggccccccgccgccgcacggcccccccaac
cacacggcgcccatcaggcacaacacgacgcacctccaccctcagcaccgccgcatgctg
ncgcagcgcatgcagagccgcggcggcgaccgggtcagaaccgggctggaccgccgcagc
cgagacccgtacagcaacctgatgagccagaaggagaaggagtgggtcaccaagatccag
atgatgcagctgcagagcaccgacccgtacctggacgactactactaccagaactactat
gagaagatggagaagcgtcaggagaaggagcgggacagcagcaggaaggagcacaccacc
aagctcatcactccgcaggtggccaaggtggagcacacctaccggccagttcagtttgcg
gggtctctggggaagctgaccgtgtccagcgtcaacaacccgaggaagatgatcgacgcc
gtggtaacgacccgctccgacgacgaggagaagagggagaagcaggtgtggaacaagagg
cgccaggtgctgtacaccgtggagaagatgtacagtctgctgctggaggtccaggacttc
gagaaacgcttcgtccaaacgccagaggaggacagagacgctctgctggagcaacacaag
agcaacacggagcaactgagcaactcgctgcaggacggggactgggaggacagggtgagc
gatgagcagtgtgtgatgatcctgtcggtgcggaaagggaagcgtctcgtctccaggctc
ctccccctcctgcccggggcgcaggctgctggcgttgtcatggtgattgcacgcaacctc
cccgccttagcgaagaaggacaagcaggaccaggcgttgtgctgcctggtggagccggtc
tctgcagtcatccagtctctgtccagctccgccctcacagacctgctgcaggagctgcag
ggcggcgagggccagctggccgccgcgctgcagaacaagttcggcgtgacgctgctgttt
ctcatcctgagcgaaggagagcgcatgcagagctccgacccaaactgtgagctcatggac
gacaatcgatggactgagttggtgttctcggtgaccagggagctgctcggcgtcccgtct
tcatcgctggctccgcccctcttcacgcctcccaacctgctgtctctgttctcgcgctac
gtggatcggcagaggctggagctgctgcaagacaagctacagatctctgcttcatccagg
tag
DBGET
integrated database retrieval system
