Poeciliopsis prolifica (blackstripe livebearer): 129355689
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Entry
129355689 CDS
T09758
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03030
DNA replication
pprl03410
Base excision repair
pprl03420
Nucleotide excision repair
pprl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129355689 (lig1)
03410 Base excision repair
129355689 (lig1)
03420 Nucleotide excision repair
129355689 (lig1)
03430 Mismatch repair
129355689 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprl03032
]
129355689 (lig1)
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129355689 (lig1)
Enzymes [BR:
pprl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129355689 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
129355689 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129355689 (lig1)
DNA replication proteins [BR:
pprl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129355689 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129355689 (lig1)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129355689 (lig1)
NER (nucleotide excision repair)
Other NER factors
129355689 (lig1)
MMR (mismatch excision repair)
Other MMR factors
129355689 (lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
129355689
NCBI-ProteinID:
XP_054881259
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MQRSIASFFQPRSKVKDSQKKTADEPVNKPIKTPLKVQNGVQEADSPIKKVAKRSRQILD
SDEDEVPLVKEQGDKGAPAKTEKTDDAFKAVPTPLSPALAPSTPVTLETPASPSAPSSIS
TSTVAKRKTARKMFPKRKLDESESRKGESEVTEEQGQQNKRPRVESGVSSTGNTDEPMEE
GAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEKEKKAEGAEKKNEAK
QKTDDENGPSVAKDKVVEKDTKDTGSPKSQMEEKKQKETKEQKDKEPAKKTPISSFFAPR
KAAVKTEKSEKNEGETKMSAERKRSEEEQKDAKGESTSGETEYDPSRPNYHPVDHACWKR
GQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYL
GMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMFQPASLTAGG
VFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAAL
SQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYDVIIPVLLKT
GIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGE
VRIFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDTEAVAWDREKKQIQPFQVLTTRKR
KDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFLFARSIDSRD
TDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIG
AYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILAKPRPY
YRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGISLRFPRFLRIRDDKK
PEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcctcgttttttcagcccaggagcaaggttaaagacagccagaag
aaaactgcagatgaaccagtgaacaagcccataaagacccccttgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcttggac
agcgacgaagacgaggtgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa
accgagaagacggatgatgcgttcaaggccgttcccacaccgttgtctccagcgctggcc
ccatccacacccgtaaccctggaaaccccggcgtcgcccagtgctcccagttccatctcc
acgtcgacagttgcgaaacgcaaaactgcgaggaagatgttccccaagaggaagctggat
gagagcgagagtcggaaaggggagtccgaggtcacggaggagcagggtcagcaaaacaaa
cgaccccgcgtggagagtggtgtcagcagtacagggaacacagatgaacccatggaggag
ggagcaaaggaagaaaaggttgaaaagccagtggctgaggctaacagcccagacgaggag
gtggggaacgagaaaacagaaggagagaaggccaagaaggaggaggagcaggtagaagaa
aagatctctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaag
cagaagacagatgatgagaacgggccctctgtcgccaaagacaaggtggttgaaaaggac
acgaaagacacagggagcccaaaaagtcaaatggaagaaaaaaagcagaaagagacgaag
gagcagaaagataaggagccggccaagaaaaccccaatcagcagtttctttgctcccaga
aaagcagcagttaagacagagaaatcagagaagaacgaaggagagacaaagatgagtgct
gagaggaaacgctcagaggaggaacagaaagacgcaaaaggtgaatcaacctcaggagag
acggaatacgatccatctagaccaaactaccatccggtggaccacgcctgctggaaacga
ggccaaaaagtgccgtacttggcagtggctcgcacctttgagaaaattgaagaagactct
ggcaggcttagaaacatcgagacgctgtcgaacctgctccgctcggtgctgctgctctct
ccagacgacttgctgtgctgtgtgtacctgtgtctgaaccagctcggccccgcttacctc
gggatggagctcggcgtcggggagacggtgctgatgaaagccgtcgctcaagcaaccggg
cgacatttggacaaaattaaagcggaggcgcaagagaaaggagatttgggcctcgtggcc
gagagttcccgtagtaaccagcgcaccatgttccagccggccagtctgacagcaggaggc
gtgtttaagaaattgaaggaaattgccagcatgagtgggaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcgtgccgcttctccgaggcccgctacatagtc
aggtccctggctgggaagctgaggattggcctcgctgagcagagtgtcctcgccgccctg
agccaggctgtctgcttgaccccgcctggacaaggtttccctcctgctgtgattgatgca
gggaagggcatgagcgctgagagcaggcgggcctggatcgaagagaagagcctcattctg
aaacaaacatactgcgaaatgccaaattatgacgtcatcatcccagttttgctgaaaaca
ggcatcgaccagctgcccaaacactgcaaactcactccaggagtcccgctgaggcccatg
ttggctcaccccaccaagggtgtcggcgaggtgatgaagaggtttgacgaggcagcgttc
acctgcgagtacaaatatgacggagagcgtgcacagattcacattctggaaagtggtgaa
gttcggattttcagccgcaaccaggaagacaacaccagcaaatacccagatatcatctcc
cgcgtccccaaggtaaagaaggactctgtagtgtcttgtgttctggacacagaggcagtg
gcctgggatcgagagaagaaacagatccaacccttccaagtcctcaccactcgtaagaga
aaggatgtggacgcctcagagatcaaagtccaagtgtgcgtgtatgcctttgacctcctc
tatctgaacggagagtccctggtgcgacagccgctgtgtcggcgtcgggagctgctgaga
gagagcttcacagaggtggagggagagtttctgttcgcccgttccatcgactctcgtgac
actgatgccatcgcagagttcctggagcagtccgtccgagactcctgcgagggcctgatg
gtgaagactctagagaaggacgcgacctatgagattgccaagcgttctcacaattggctc
aagttaaagaaggattacctggacggtgtgggtgacacgatggacctctgtgtgatcggt
gcctaccttggaaagggaaaaagaacaggcacatacggtggcttcctgctggcctgctat
gatgaagacaatgaggagtttcagtcagtctgcaagatcgggacaggctttaaggatgaa
gatctggagcagcattacaagtttttaaaggagcacatcctggccaagccccgcccatac
tatcgcgtggaccaatcagccgagcccgacgtgtggctggacgccgtgcaggtctgggag
gtgaagtgcgccgacctctcgctgtcgcccgtctacaaggccgccatgggaatggtggat
gcagagaaaggcatttctctgaggttccctcgtttccttcgcatcagagacgacaagaag
cccgaggacgccaccactggagctcagatcgctgatttgtacaagaagcagcagcagatt
cagaatcaaggggagaaagctgacccagaggactactactga
DBGET
integrated database retrieval system
