Poeciliopsis prolifica (blackstripe livebearer): 129355991
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Entry
129355991 CDS
T09758
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
pprl04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129355991
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129355991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129355991
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129355991
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129355991
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129355991
U7-dependent histone pre-mRNA processing factors
129355991
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
PDS5
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
129355991
NCBI-ProteinID:
XP_054881593
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MELPSDDGEPPAVLDVTTSEKVVELLNQAALIPTDEKLTVLKQVQELIINKDPSLLDNFL
DEIIAFQTDRSMEVRKFVIGFIEEACKRDNELLLRLIANLNLLLKDDSVNVVKKAILSLT
QLYKVALQWLVRSRSVSEMQEACWDLVSQMTGDVLSMLDSENDGVRTHAIKFTESLIVTL
SPRTPESDVPKRQEGDISLDKVPRDHPYIRYDALCEEGKAALDKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHPCS
LEFQVQIGTLLLDLGMPQSEISRNTPPPREQRKRPRYEPAAEGKKVKMEPALIEDDEDKE
EPVPLAAPKPAAAPTPQSAIDLTAEFLRPLLTPENVANLVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDESGKEEPVEDESGGKDVLIRR
SLSSMVGQAISVVGGYSEKPPAPEAPAVKRLPEPILPSVQTKMAGAGGRKKVFRLADVVQ
PLSDSQIGSLSSRAVKRILHSEKAVTQSGMSHVRVKLLSRLVTQFEGVMKEDVLDYVLED
MRCRSDLAFSLLYQEYNSYLSQLPAGLLDGYDHCLYTLLSGLQEKPEQRDGLFTKLVLEA
PIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHDKEKVRST
ALAFLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCL
FLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLI
KLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFG
EKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKY
PKVWEGFVKCCQRTKPQSYSVLLQLPPLQLASVFERCPEMRAPLLQHVLSFTPHQQAHIP
TSVMAVLEAHKKPDPAPAEPVLEEEPAEPTVAQQPGPEPGPGPTLQQETVLLRDEEEPME
QEEAGPPTPETTDPVHQEEDPKVQRNQNQNKARSHWRKQWRSPRPSHRISRNRSRFQNRR
RRLQLEAGRKTQSRPTVLLL
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggagcttccttcagatgacggggagccgcctgctgtcctcgacgtcaccaccagcgag
aaggtggtggagctgctgaaccaggcggctctcatccccacagatgaaaagctcactgtt
ctcaaacaggttcaggaactcatcatcaacaaggatccgtctcttctggacaacttcctg
gatgagatcatcgccttccagacggaccggtccatggaagtcaggaagtttgtgatcggg
ttcatcgaggaagcctgcaaacgggacaacgagcttctgctgcggctcatcgccaacctg
aacctgctgctgaaggacgacagcgtcaacgtggtgaagaaggccatcctgtccctgacg
cagctctacaaggtcgccctgcagtggctggtccggtcccggtcggtgtcggagatgcag
gaggcctgctgggacttggtgtcccagatgaccggagacgttctgagcatgctcgactcg
gagaacgacggcgtccggacgcacgccatcaagttcaccgagtcgctgatcgtcacactg
tcgccgcggacgcccgagtccgacgtccccaagagacaggaaggagacatcagcctggac
aaggtccccagggaccacccctacatccgctacgacgctctgtgcgaggaggggaaggcg
gcgctggacaagctgctgaagttcatggttcacccggcaatttccagcatcaacctgaca
accgcgctcggctccctagctaccatcgcgaggcaacgcccgatgttcatgtccgaggtg
gtgcaggcctacgagacgctgcacgccaacctgccccccaccctggccaagtcccaggtg
agcagcgtgaggaagaacctgaagctgcacctggtgtcggttctgaagcatccgtgcagc
ctggagttccaggtccagatcgggacgctgctgctggacctgggcatgccgcagagcgag
atcagccgcaacacgccgccgccgcgcgagcagaggaagcgtccgcgctacgagcccgcc
gccgagggcaagaaggtcaagatggaaccggcgctcatcgaagacgacgaggacaaagag
gagccggtaccgctcgctgccccgaagccggcggccgccccgactccgcagtcagccatc
gacctcacggccgaattcctgcgacccctgctgaccccggagaacgtcgccaacctggtg
ctcatcagcatggtgtacctgccggacgtcatgccggcgtccttccaggccacctacaca
ccggtggagtcagccggaaccgacgcccagatcaaacacctggcccggctgatggcgacc
cagatgacggcggccgggatcggaccaggtctggagcagtgcaaggcgcgggaggacgag
tcggggaaggaggagccggtggaggacgagtcgggggggaaggacgtcctgatcagacgg
tcgctgtcctccatggtgggccaggccatctccgtggtgggcggctacagcgagaagccg
cctgcccccgaggcgcccgccgtcaagaggcttcctgagcccatcctgccctccgtccag
accaagatggctggcgccggcggcaggaagaaggtgttccgcctggcggacgtggtccag
ccgctgtccgactcgcagatcggatcgctgtcctccagagccgtgaagcgcatcctgcac
tcggagaaggcggtcacccagagcggcatgtcccacgtcagggtgaagctgctgtcccgg
ctggtgacccagttcgagggcgtgatgaaggaggacgtcctggactacgtcctggaggac
atgcgatgccgtagcgacctggccttctctctgctgtaccaggagtacaacagctacctg
agccagctgccggcaggcctgctggacggatacgaccactgcctctacacgctgctgtcc
gggctgcaggagaaacccgagcagagggacgggctcttcaccaagctggttctggaggct
cccatcatcaccgagtcggcgctggaggtgatccgccgctactgtgaggacgagtcccgg
gtttatctgggcatgacgacgctgaaggagctgatcgtcaagaggccgtccaggcagttc
cagtacctccatgttctgttggacctcagctcccacgacaaagagaaggtgcgcagcacc
gccctggccttcctgaagcggatgtatgagaaggaccacctgagggactacatcgagaag
tttgccctgaactacctgcagctcctggttcaccccaacccgccctcgctgctgttcggc
gccgataaggacacggaggttgctgctccgtggacggaggagacggtgagacagtgtctc
ttcctctacctgtccctccttccgctgaaccaccggctggtccatgagctggcgtccgtc
tacaccgaggccatcgccgacatcaagcgcagcgtgctgcgcgccatcgagcagccgatc
cgcgggatggggatgaactctccagagctgctgcttctggttgaaaactgtcctaaaggg
gcggagactctggtcactcgctgcctgcacattttgaccgataaagtgcctccatcgccg
gagctggtggagcgggtccgggacctctaccacaagcgcgttccggacgttcgcttcctg
atcccggtcatcaacggcctggagaagaatgaagtcatccaggctctgccgaagctcatc
aagctcaaccccatcgtcgtgaaggaagtcttcaaccggctgctgggaactcagcacagt
gagggaagctcttcggtttctccactgactccaggagatctgctcatcgccttgcacaac
atcgactcaacaaagtgcgacatgaaatccatcatcaaagccaccaacctgtgcttcggg
gagaagaacgtctatacgtcggaggtgctggcggtggtgatgcagcagctgatggagcag
aacccgctgcccatgctgctgatgcgcaccgtcatccagtccctcactatgtacccgcgc
ctgggcggcttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagtac
cccaaggtgtgggagggcttcgtgaagtgctgccagcggaccaagccgcagtcctacagc
gttctgctgcagctgccgccgctgcagctggccagcgtgtttgagcgctgcccggagatg
agggcgccgctgctgcagcacgtcctgtccttcacgccacatcagcaagctcacatcccg
acctccgtcatggcggtgctggaggcccacaagaagcccgacccggcgccagcggagccg
gttctggaggaggaaccggcagaaccaactgtcgcacagcaaccaggaccagaaccagga
ccaggaccgacgctacagcaggaaaccgttctgctgagggatgaagaggaaccgatggaa
caggaagaggcggggccaccgacaccagagaccaccgacccggttcaccaggaagaagat
ccgaaagtgcagaggaaccagaaccagaacaaggccaggagccattggaggaaacaatgg
aggagcccgaggccgagccatcggatcagtcggaaccgctcacggttccagaaccggagg
cgccgcctgcagctggaagcgggtcggaagacgcagagtagaccgacggttctgctgctg
taa
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integrated database retrieval system
